Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VUQ entry

There are 2 chains in PDB entry 9VUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ARG 67PRO 877
C
 ARG 67PRO 877
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9VUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
103 112Right-handed alpha
Helix 2
AA2
E
197 202Right-handed 310
Helix 3
AA3
E
210 220Right-handed alpha
Helix 4
AA4
E
247 265Right-handed alpha
Helix 5
AA5
E
277 283Right-handed alpha
Helix 6
AA6
E
284 299Right-handed alpha
Helix 7
AA7
E
301 317Right-handed alpha
Helix 8
AA8
E
321 339Right-handed alpha
Helix 9
AA9
E
347 355Right-handed alpha
Helix 10
AB1
E
369 382Right-handed alpha
Helix 11
AB2
E
394 396Right-handed 310
Helix 12
AB3
E
399 407Right-handed alpha
Helix 13
AB4
E
419 437Right-handed alpha
Helix 14
AB5
E
460 472Right-handed alpha
Helix 15
AB6
E
495 500Right-handed alpha
Helix 16
AB7
E
508 515Right-handed alpha
Helix 17
AB8
E
515 521Right-handed alpha
Helix 18
AB9
E
537 545Right-handed alpha
Helix 19
AC1
E
559 580Right-handed alpha
Helix 20
AC2
E
584 594Right-handed alpha
Helix 21
AC3
E
595 598Right-handed 310
Helix 22
AC4
E
603 620Right-handed alpha
Helix 23
AC5
E
632 644Right-handed alpha
Helix 24
AC6
E
661 673Right-handed alpha
Helix 25
AC7
E
674 677Right-handed 310
Helix 26
AC8
E
678 688Right-handed alpha
Helix 27
AC9
E
696 715Right-handed alpha
Helix 28
AD1
E
719 737Right-handed alpha
Helix 29
AD2
E
758 769Right-handed alpha
Helix 30
AD3
E
771 789Right-handed alpha
Helix 31
AD4
E
794 813Right-handed alpha
Helix 32
AD5
E
817 821Right-handed 310
Helix 33
AD6
E
822 837Right-handed alpha
Helix 34
AD7
E
850 860Right-handed alpha
Helix 35
AD8
E
861 863Right-handed 310
Helix 36
AD9
E
865 874Right-handed alpha
Helix 37
AE1
C
103 112Right-handed alpha
Helix 38
AE2
C
197 202Right-handed 310
Helix 39
AE3
C
210 220Right-handed alpha
Helix 40
AE4
C
247 265Right-handed alpha
Helix 41
AE5
C
277 283Right-handed alpha
Helix 42
AE6
C
284 299Right-handed alpha
Helix 43
AE7
C
301 317Right-handed alpha
Helix 44
AE8
C
321 339Right-handed alpha
Helix 45
AE9
C
347 355Right-handed alpha
Helix 46
AF1
C
370 382Right-handed alpha
Helix 47
AF2
C
394 396Right-handed 310
Helix 48
AF3
C
399 407Right-handed alpha
Helix 49
AF4
C
419 437Right-handed alpha
Helix 50
AF5
C
460 472Right-handed alpha
Helix 51
AF6
C
495 500Right-handed alpha
Helix 52
AF7
C
508 515Right-handed alpha
Helix 53
AF8
C
515 521Right-handed alpha
Helix 54
AF9
C
537 545Right-handed alpha
Helix 55
AG1
C
559 580Right-handed alpha
Helix 56
AG2
C
584 594Right-handed alpha
Helix 57
AG3
C
595 598Right-handed 310
Helix 58
AG4
C
603 620Right-handed alpha
Helix 59
AG5
C
632 644Right-handed alpha
Helix 60
AG6
C
661 673Right-handed alpha
Helix 61
AG7
C
674 677Right-handed 310
Helix 62
AG8
C
678 688Right-handed alpha
Helix 63
AG9
C
696 715Right-handed alpha
Helix 64
AH1
C
719 737Right-handed alpha
Helix 65
AH2
C
758 769Right-handed alpha
Helix 66
AH3
C
771 789Right-handed alpha
Helix 67
AH4
C
794 813Right-handed alpha
Helix 68
AH5
C
817 821Right-handed 310
Helix 69
AH6
C
822 837Right-handed alpha
Helix 70
AH7
C
850 860Right-handed alpha
Helix 71
AH8
C
861 863Right-handed 310
Helix 72
AH9
C
865 874Right-handed alpha
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There are 12 sheets in PDB entry 9VUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
182 184first strand
Strand 2
E
224 226anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
343 346first strand
Strand 2
E
527 531parallel
Strand 3
E
477 485anti-parallel
Strand 4
E
359 364parallel
Strand 5
E
440 441parallel
Strand 6
E
388 392parallel
Strand 7
E
410 412parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
343 346first strand
Strand 2
E
527 531parallel
Strand 3
E
477 485anti-parallel
Strand 4
E
535 536anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
582 583first strand
Strand 2
E
627 628parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
600 602first strand
Strand 2
E
656 658anti-parallel
Strand 3
E
647 649anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
693 695first strand
Strand 2
E
750 753anti-parallel
Strand 3
E
740 744anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 184first strand
Strand 2
C
224 226anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 346first strand
Strand 2
C
527 531parallel
Strand 3
C
477 485anti-parallel
Strand 4
C
359 364parallel
Strand 5
C
440 441parallel
Strand 6
C
388 392parallel
Strand 7
C
410 412parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 346first strand
Strand 2
C
527 531parallel
Strand 3
C
477 485anti-parallel
Strand 4
C
535 536anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
582 583first strand
Strand 2
C
627 628parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
600 602first strand
Strand 2
C
656 658anti-parallel
Strand 3
C
647 649anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
693 695first strand
Strand 2
C
750 753anti-parallel
Strand 3
C
740 744anti-parallel
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