Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VUS entry

There are 5 chains in PDB entry 9VUS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 3	VAL 361
C	ALA 10	PHE 61
D	LEU 7	ASN 340
E	ASP 1	LEU 248
A	ASP 26	SER 322

There are 30 helices in PDB entry 9VUS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	33	Right-handed alpha
Helix 2	AA2	B	42	44	Right-handed 310
Helix 3	AA3	B	45	56	Right-handed alpha
Helix 4	AA4	B	210	216	Right-handed 310
Helix 5	AA5	B	232	245	Right-handed alpha
Helix 6	AA6	B	260	269	Right-handed alpha
Helix 7	AA7	B	274	279	Right-handed alpha
Helix 8	AA8	B	280	283	Right-handed 310
Helix 9	AA9	B	298	319	Right-handed alpha
Helix 10	AB1	B	337	358	Right-handed alpha
Helix 11	AB2	C	11	24	Right-handed alpha
Helix 12	AB3	C	29	44	Right-handed alpha
Helix 13	AB4	D	8	26	Right-handed alpha
Helix 14	AB5	D	29	34	Right-handed alpha
Helix 15	AB6	E	62	65	Right-handed 310
Helix 16	AB7	E	87	91	Right-handed 310
Helix 17	AB8	A	28	35	Right-handed alpha
Helix 18	AB9	A	35	62	Right-handed alpha
Helix 19	AC1	A	66	85	Right-handed alpha
Helix 20	AC2	A	85	95	Right-handed alpha
Helix 21	AC3	A	102	137	Right-handed alpha
Helix 22	AC4	A	142	145	Right-handed 310
Helix 23	AC5	A	146	166	Right-handed alpha
Helix 24	AC6	A	167	169	Right-handed 310
Helix 25	AC7	A	185	189	Right-handed 310
Helix 26	AC8	A	191	207	Right-handed alpha
Helix 27	AC9	A	207	227	Right-handed alpha
Helix 28	AD1	A	233	270	Right-handed alpha
Helix 29	AD2	A	275	303	Right-handed alpha
Helix 30	AD3	A	306	322	Right-handed alpha

There are 12 sheets in PDB entry 9VUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	34	40	parallel
Strand 4	B	220	226	parallel
Strand 5	B	253	259	parallel
Strand 6	B	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	336	340	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	204	208	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	187	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VUS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VUS