Analysis of interatomic Contacts of Structural Units in PDB entry:
9VV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VV6 entry

There are 5 chains in PDB entry 9VV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 24	CYS 314
C	THR 6	GLU 58
D	LEU 4	ASN 340
B	THR 4	VAL 361
E	ASP 1	LEU 248

There are 26 helices in PDB entry 9VV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	61	Right-handed alpha
Helix 2	AA2	A	66	85	Right-handed alpha
Helix 3	AA3	A	85	95	Right-handed alpha
Helix 4	AA4	A	102	137	Right-handed alpha
Helix 5	AA5	A	146	172	Right-handed alpha
Helix 6	AA6	A	191	207	Right-handed alpha
Helix 7	AA7	A	207	228	Right-handed alpha
Helix 8	AA8	A	233	270	Right-handed alpha
Helix 9	AA9	A	273	293	Right-handed alpha
Helix 10	AB1	A	293	302	Right-handed alpha
Helix 11	AB2	A	306	314	Right-handed alpha
Helix 12	AB3	C	7	23	Right-handed alpha
Helix 13	AB4	C	32	41	Right-handed alpha
Helix 14	AB5	D	5	22	Right-handed alpha
Helix 15	AB6	B	6	33	Right-handed alpha
Helix 16	AB7	B	45	56	Right-handed alpha
Helix 17	AB8	B	210	215	Right-handed 310
Helix 18	AB9	B	232	245	Right-handed alpha
Helix 19	AC1	B	260	271	Right-handed alpha
Helix 20	AC2	B	274	278	Right-handed 310
Helix 21	AC3	B	279	283	Right-handed 310
Helix 22	AC4	B	298	320	Right-handed alpha
Helix 23	AC5	B	337	358	Right-handed alpha
Helix 24	AC6	E	28	32	Right-handed 310
Helix 25	AC7	E	74	76	Right-handed 310
Helix 26	AC8	E	87	91	Right-handed 310

There are 13 sheets in PDB entry 9VV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	335	339	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	250	254	anti-parallel
Strand 4	D	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	307	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	220	226	parallel
Strand 5	B	253	259	parallel
Strand 6	B	326	330	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	119	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	93	98	anti-parallel
Strand 5	E	115	116	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	226	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	186	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	161	first strand
Strand 2	E	212	216	anti-parallel
Strand 3	E	205	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VV6