Analysis of interatomic Contacts of Structural Units in PDB entry:
9VV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VV7 entry

There are 2 chains in PDB entry 9VV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 247LEU 425
B
 GLU 247LEU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9VV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
265 275Right-handed alpha
Helix 2
AA2
A
278 288Right-handed alpha
Helix 3
AA3
A
395 420Right-handed alpha
Helix 4
AA4
B
265 275Right-handed alpha
Helix 5
AA5
B
278 289Right-handed alpha
Helix 6
AA6
B
398 422Right-handed alpha
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There are 4 sheets in PDB entry 9VV7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 262first strand
Strand 2
A
377 389anti-parallel
Strand 3
A
358 370anti-parallel
Strand 4
A
340 348anti-parallel
Strand 5
A
325 337anti-parallel
Strand 6
A
305 316anti-parallel
Strand 7
A
291 295anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 262first strand
Strand 2
A
377 389anti-parallel
Strand 3
A
358 370anti-parallel
Strand 4
A
340 348anti-parallel
Strand 5
A
325 337anti-parallel
Strand 6
A
305 316anti-parallel
Strand 7
A
299 302anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 262first strand
Strand 2
B
378 389anti-parallel
Strand 3
B
358 369anti-parallel
Strand 4
B
340 348anti-parallel
Strand 5
B
326 337anti-parallel
Strand 6
B
305 315anti-parallel
Strand 7
B
291 295anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 262first strand
Strand 2
B
378 389anti-parallel
Strand 3
B
358 369anti-parallel
Strand 4
B
340 348anti-parallel
Strand 5
B
326 337anti-parallel
Strand 6
B
305 315anti-parallel
Strand 7
B
299 302anti-parallel
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