Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VVK entry

There are 4 chains in PDB entry 9VVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 1045
B	MET 1	ALA 1045
C	MET 1	ALA 1045
D	MET 1	ALA 1045

There are174 helices in PDB entry 9VVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	25	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	63	75	Right-handed alpha
Helix 4	AA4	A	89	98	Right-handed alpha
Helix 5	AA5	A	107	116	Right-handed alpha
Helix 6	AA6	A	116	124	Right-handed alpha
Helix 7	AA7	A	140	148	Right-handed alpha
Helix 8	AA8	A	176	192	Right-handed alpha
Helix 9	AA9	A	248	266	Right-handed alpha
Helix 10	AB1	A	294	296	Right-handed 310
Helix 11	AB2	A	297	305	Right-handed alpha
Helix 12	AB3	A	308	316	Right-handed alpha
Helix 13	AB4	A	320	325	Right-handed alpha
Helix 14	AB5	A	398	411	Right-handed alpha
Helix 15	AB6	A	421	430	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	A	458	474	Right-handed alpha
Helix 18	AB9	A	503	508	Right-handed alpha
Helix 19	AC1	A	510	520	Right-handed alpha
Helix 20	AC2	A	535	540	Right-handed alpha
Helix 21	AC3	A	545	550	Right-handed alpha
Helix 22	AC4	A	551	557	Right-handed alpha
Helix 23	AC5	A	583	595	Right-handed alpha
Helix 24	AC6	A	605	609	Right-handed 310
Helix 25	AC7	A	616	631	Right-handed alpha
Helix 26	AC8	A	646	653	Right-handed alpha
Helix 27	AC9	A	681	697	Right-handed alpha
Helix 28	AD1	A	710	723	Right-handed alpha
Helix 29	AD2	A	740	749	Right-handed alpha
Helix 30	AD3	A	771	778	Right-handed alpha
Helix 31	AD4	A	795	804	Right-handed alpha
Helix 32	AD5	A	818	822	Right-handed 310
Helix 33	AD6	A	826	841	Right-handed alpha
Helix 34	AD7	A	845	859	Right-handed alpha
Helix 35	AD8	A	868	883	Right-handed alpha
Helix 36	AD9	A	886	891	Right-handed alpha
Helix 37	AE1	A	893	897	Right-handed 310
Helix 38	AE2	A	900	908	Right-handed alpha
Helix 39	AE3	A	921	927	Right-handed alpha
Helix 40	AE4	A	943	947	Right-handed alpha
Helix 41	AE5	A	951	963	Right-handed alpha
Helix 42	AE6	A	963	978	Right-handed alpha
Helix 43	AE7	A	984	989	Right-handed alpha
Helix 44	AE8	B	13	25	Right-handed alpha
Helix 45	AE9	B	39	44	Right-handed alpha
Helix 46	AF1	B	63	75	Right-handed alpha
Helix 47	AF2	B	89	98	Right-handed alpha
Helix 48	AF3	B	107	116	Right-handed alpha
Helix 49	AF4	B	116	124	Right-handed alpha
Helix 50	AF5	B	140	148	Right-handed alpha
Helix 51	AF6	B	149	151	Right-handed 310
Helix 52	AF7	B	176	192	Right-handed alpha
Helix 53	AF8	B	248	267	Right-handed alpha
Helix 54	AF9	B	294	296	Right-handed 310
Helix 55	AG1	B	297	305	Right-handed alpha
Helix 56	AG2	B	308	316	Right-handed alpha
Helix 57	AG3	B	320	325	Right-handed alpha
Helix 58	AG4	B	398	412	Right-handed alpha
Helix 59	AG5	B	421	430	Right-handed alpha
Helix 60	AG6	B	431	436	Right-handed alpha
Helix 61	AG7	B	458	473	Right-handed alpha
Helix 62	AG8	B	501	507	Right-handed alpha
Helix 63	AG9	B	509	521	Right-handed alpha
Helix 64	AH1	B	544	550	Right-handed alpha
Helix 65	AH2	B	551	557	Right-handed alpha
Helix 66	AH3	B	583	594	Right-handed alpha
Helix 67	AH4	B	605	609	Right-handed 310
Helix 68	AH5	B	616	631	Right-handed alpha
Helix 69	AH6	B	647	653	Right-handed alpha
Helix 70	AH7	B	681	694	Right-handed alpha
Helix 71	AH8	B	710	723	Right-handed alpha
Helix 72	AH9	B	740	749	Right-handed alpha
Helix 73	AI1	B	771	778	Right-handed alpha
Helix 74	AI2	B	795	806	Right-handed alpha
Helix 75	AI3	B	817	822	Right-handed 310
Helix 76	AI4	B	826	841	Right-handed alpha
Helix 77	AI5	B	845	859	Right-handed alpha
Helix 78	AI6	B	868	884	Right-handed alpha
Helix 79	AI7	B	886	891	Right-handed alpha
Helix 80	AI8	B	893	897	Right-handed 310
Helix 81	AI9	B	900	908	Right-handed alpha
Helix 82	AJ1	B	921	927	Right-handed alpha
Helix 83	AJ2	B	943	949	Right-handed alpha
Helix 84	AJ3	B	951	963	Right-handed alpha
Helix 85	AJ4	B	963	978	Right-handed alpha
Helix 86	AJ5	B	984	990	Right-handed alpha
Helix 87	AJ6	C	11	25	Right-handed alpha
Helix 88	AJ7	C	39	44	Right-handed alpha
Helix 89	AJ8	C	64	74	Right-handed alpha
Helix 90	AJ9	C	89	98	Right-handed alpha
Helix 91	AK1	C	109	116	Right-handed alpha
Helix 92	AK2	C	117	126	Right-handed alpha
Helix 93	AK3	C	140	148	Right-handed alpha
Helix 94	AK4	C	149	151	Right-handed 310
Helix 95	AK5	C	176	192	Right-handed alpha
Helix 96	AK6	C	250	267	Right-handed alpha
Helix 97	AK7	C	294	299	Right-handed 310
Helix 98	AK8	C	300	305	Right-handed alpha
Helix 99	AK9	C	308	316	Right-handed alpha
Helix 100	AL1	C	320	325	Right-handed alpha
Helix 101	AL2	C	398	412	Right-handed alpha
Helix 102	AL3	C	422	430	Right-handed alpha
Helix 103	AL4	C	431	437	Right-handed alpha
Helix 104	AL5	C	440	444	Right-handed 310
Helix 105	AL6	C	447	451	Right-handed 310
Helix 106	AL7	C	458	474	Right-handed alpha
Helix 107	AL8	C	484	489	Right-handed 310
Helix 108	AL9	C	501	508	Right-handed alpha
Helix 109	AM1	C	510	518	Right-handed alpha
Helix 110	AM2	C	535	540	Right-handed alpha
Helix 111	AM3	C	544	549	Right-handed alpha
Helix 112	AM4	C	550	557	Right-handed alpha
Helix 113	AM5	C	571	577	Right-handed alpha
Helix 114	AM6	C	583	595	Right-handed alpha
Helix 115	AM7	C	605	609	Right-handed 310
Helix 116	AM8	C	616	631	Right-handed alpha
Helix 117	AM9	C	647	653	Right-handed alpha
Helix 118	AN1	C	681	694	Right-handed alpha
Helix 119	AN2	C	710	723	Right-handed alpha
Helix 120	AN3	C	740	749	Right-handed alpha
Helix 121	AN4	C	771	776	Right-handed alpha
Helix 122	AN5	C	788	793	Right-handed alpha
Helix 123	AN6	C	795	805	Right-handed alpha
Helix 124	AN7	C	818	822	Right-handed 310
Helix 125	AN8	C	826	841	Right-handed alpha
Helix 126	AN9	C	845	860	Right-handed alpha
Helix 127	AO1	C	868	884	Right-handed alpha
Helix 128	AO2	C	900	909	Right-handed alpha
Helix 129	AO3	C	921	927	Right-handed alpha
Helix 130	AO4	C	943	947	Right-handed alpha
Helix 131	AO5	C	951	963	Right-handed alpha
Helix 132	AO6	C	963	978	Right-handed alpha
Helix 133	AO7	D	11	25	Right-handed alpha
Helix 134	AO8	D	63	75	Right-handed alpha
Helix 135	AO9	D	89	98	Right-handed alpha
Helix 136	AP1	D	107	116	Right-handed alpha
Helix 137	AP2	D	117	126	Right-handed alpha
Helix 138	AP3	D	140	148	Right-handed alpha
Helix 139	AP4	D	176	192	Right-handed alpha
Helix 140	AP5	D	248	267	Right-handed alpha
Helix 141	AP6	D	294	298	Right-handed 310
Helix 142	AP7	D	299	304	Right-handed alpha
Helix 143	AP8	D	308	316	Right-handed alpha
Helix 144	AP9	D	320	325	Right-handed alpha
Helix 145	AQ1	D	398	412	Right-handed alpha
Helix 146	AQ2	D	421	428	Right-handed alpha
Helix 147	AQ3	D	431	437	Right-handed alpha
Helix 148	AQ4	D	458	473	Right-handed alpha
Helix 149	AQ5	D	484	489	Right-handed 310
Helix 150	AQ6	D	509	520	Right-handed alpha
Helix 151	AQ7	D	535	540	Right-handed alpha
Helix 152	AQ8	D	545	550	Right-handed alpha
Helix 153	AQ9	D	551	557	Right-handed alpha
Helix 154	AR1	D	571	577	Right-handed alpha
Helix 155	AR2	D	583	594	Right-handed alpha
Helix 156	AR3	D	605	609	Right-handed 310
Helix 157	AR4	D	616	631	Right-handed alpha
Helix 158	AR5	D	643	653	Right-handed alpha
Helix 159	AR6	D	681	694	Right-handed alpha
Helix 160	AR7	D	710	723	Right-handed alpha
Helix 161	AR8	D	740	749	Right-handed alpha
Helix 162	AR9	D	771	778	Right-handed alpha
Helix 163	AS1	D	795	806	Right-handed alpha
Helix 164	AS2	D	817	822	Right-handed 310
Helix 165	AS3	D	826	841	Right-handed alpha
Helix 166	AS4	D	845	860	Right-handed alpha
Helix 167	AS5	D	868	884	Right-handed alpha
Helix 168	AS6	D	886	891	Right-handed alpha
Helix 169	AS7	D	893	897	Right-handed 310
Helix 170	AS8	D	900	909	Right-handed alpha
Helix 171	AS9	D	921	927	Right-handed alpha
Helix 172	AT1	D	943	947	Right-handed alpha
Helix 173	AT2	D	951	963	Right-handed alpha
Helix 174	AT3	D	963	978	Right-handed alpha

There are 32 sheets in PDB entry 9VVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	4	7	parallel
Strand 4	A	78	80	parallel
Strand 5	A	102	103	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	197	198	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	271	278	anti-parallel
Strand 4	A	284	290	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	237	242	anti-parallel
Strand 5	A	336	343	anti-parallel
Strand 6	A	388	396	anti-parallel
Strand 7	A	369	371	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	564	566	parallel
Strand 3	A	599	604	parallel
Strand 4	A	634	638	parallel
Strand 5	A	661	667	parallel
Strand 6	A	699	703	parallel
Strand 7	A	729	732	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	1001	first strand
Strand 2	A	1007	1015	anti-parallel
Strand 3	A	1023	1030	anti-parallel
Strand 4	A	1033	1034	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	1001	first strand
Strand 2	A	1007	1015	anti-parallel
Strand 3	A	1023	1030	anti-parallel
Strand 4	A	1037	1040	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	4	7	parallel
Strand 3	B	78	80	parallel
Strand 4	B	102	103	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	197	198	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	208	215	anti-parallel
Strand 3	B	270	277	anti-parallel
Strand 4	B	289	290	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	208	215	anti-parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	237	242	anti-parallel
Strand 5	B	336	342	anti-parallel
Strand 6	B	390	396	anti-parallel
Strand 7	B	370	373	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	352	353	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	528	first strand
Strand 2	B	564	565	parallel
Strand 3	B	599	604	parallel
Strand 4	B	634	638	parallel
Strand 5	B	661	667	parallel
Strand 6	B	700	704	parallel
Strand 7	B	729	733	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1000	1001	first strand
Strand 2	B	1007	1008	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1010	1015	first strand
Strand 2	B	1024	1030	anti-parallel
Strand 3	B	1033	1039	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	27	32	parallel
Strand 3	C	4	7	parallel
Strand 4	C	78	80	parallel
Strand 5	C	102	103	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	156	159	anti-parallel
Strand 3	C	197	198	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	209	215	anti-parallel
Strand 3	C	227	228	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	209	215	anti-parallel
Strand 3	C	271	275	anti-parallel
Strand 4	C	289	290	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	337	342	anti-parallel
Strand 3	C	390	395	anti-parallel
Strand 4	C	369	371	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	352	353	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	564	566	parallel
Strand 3	C	599	604	parallel
Strand 4	C	632	638	parallel
Strand 5	C	661	667	parallel
Strand 6	C	700	703	parallel
Strand 7	C	729	732	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1010	1015	first strand
Strand 2	C	1023	1030	anti-parallel
Strand 3	C	1034	1040	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	27	32	parallel
Strand 3	D	4	7	parallel
Strand 4	D	78	80	parallel
Strand 5	D	102	103	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	197	201	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	228	first strand
Strand 2	D	207	215	anti-parallel
Strand 3	D	271	278	anti-parallel
Strand 4	D	289	290	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	242	first strand
Strand 2	D	337	340	anti-parallel
Strand 3	D	392	395	anti-parallel
Strand 4	D	369	371	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	343	first strand
Strand 2	D	388	390	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	346	first strand
Strand 2	D	352	353	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	528	first strand
Strand 2	D	564	566	parallel
Strand 3	D	599	604	parallel
Strand 4	D	634	638	parallel
Strand 5	D	661	667	parallel
Strand 6	D	699	703	parallel
Strand 7	D	729	732	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1000	1003	first strand
Strand 2	D	1006	1008	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1010	1015	first strand
Strand 2	D	1025	1030	anti-parallel
Strand 3	D	1034	1038	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVK