Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VVM entry

There is 1 chain in PDB entry 9VVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 41VAL 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9VVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed alpha
Helix 2
AA2
A
46 66Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
78 109Right-handed alpha
Helix 5
AA5
A
110 133Right-handed alpha
Helix 6
AA6
A
138 172Right-handed alpha
Helix 7
AA7
A
176 209Right-handed alpha
Helix 8
AA8
A
216 238Right-handed alpha
Helix 9
AA9
A
250 270Right-handed alpha
Helix 10
AB1
A
279 285Right-handed alpha
Helix 11
AB2
A
289 304Right-handed alpha
Helix 12
AB3
A
305 307Right-handed 310
Helix 13
AB4
A
308 317Right-handed alpha
Helix 14
AB5
A
322 329Right-handed alpha
Helix 15
AB6
A
343 345Right-handed 310
Helix 16
AB7
A
346 362Right-handed alpha
Helix 17
AB8
A
362 371Right-handed alpha
Helix 18
AB9
A
377 405Right-handed alpha
Helix 19
AC1
A
607 610Right-handed 310
Helix 20
AC2
A
611 637Right-handed alpha
Helix 21
AC3
A
641 667Right-handed alpha
Helix 22
AC4
A
670 695Right-handed alpha
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There are 7 sheets in PDB entry 9VVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
413 420anti-parallel
Strand 3
A
485 494parallel
Strand 4
A
497 499anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
413 420anti-parallel
Strand 3
A
485 494parallel
Strand 4
A
502 505anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
461 470anti-parallel
Strand 4
A
473 482anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
516 521anti-parallel
Strand 3
A
549 550anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
516 521anti-parallel
Strand 3
A
580 588parallel
Strand 4
A
592 601anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
527 529anti-parallel
Strand 3
A
559 563anti-parallel
Strand 4
A
567 570anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
574 575anti-parallel
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