Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VVQ entry

There are 7 chains in PDB entry 9VVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	ASN 3	ALA 346
K	ALA 2	ALA 346
L	ALA 2	ALA 346
O	ALA 2	ALA 346
R	ALA 2	ALA 346
T	ALA 2	ALA 346
W	ALA 2	ALA 346

There are 35 helices in PDB entry 9VVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	77	82	Right-handed 310
Helix 2	AA2	I	107	110	Right-handed 310
Helix 3	AA3	I	147	151	Right-handed 310
Helix 4	AA4	I	173	185	Right-handed alpha
Helix 5	AA5	I	210	216	Right-handed alpha
Helix 6	AA6	K	77	81	Right-handed 310
Helix 7	AA7	K	129	138	Right-handed alpha
Helix 8	AA8	K	141	145	Right-handed 310
Helix 9	AA9	K	173	176	Right-handed 310
Helix 10	AB1	K	177	194	Right-handed alpha
Helix 11	AB2	K	207	216	Right-handed alpha
Helix 12	AB3	L	116	121	Right-handed alpha
Helix 13	AB4	L	127	135	Right-handed alpha
Helix 14	AB5	L	173	184	Right-handed alpha
Helix 15	AB6	L	187	192	Right-handed alpha
Helix 16	AB7	L	211	216	Right-handed alpha
Helix 17	AB8	O	77	81	Right-handed 310
Helix 18	AB9	O	116	125	Right-handed alpha
Helix 19	AC1	O	142	146	Right-handed 310
Helix 20	AC2	O	147	151	Right-handed 310
Helix 21	AC3	O	177	184	Right-handed alpha
Helix 22	AC4	O	188	194	Right-handed alpha
Helix 23	AC5	R	77	81	Right-handed 310
Helix 24	AC6	R	116	121	Right-handed alpha
Helix 25	AC7	R	130	135	Right-handed alpha
Helix 26	AC8	R	147	151	Right-handed 310
Helix 27	AC9	R	177	184	Right-handed alpha
Helix 28	AD1	T	135	140	Right-handed alpha
Helix 29	AD2	T	173	183	Right-handed alpha
Helix 30	AD3	T	187	192	Right-handed alpha
Helix 31	AD4	W	77	81	Right-handed 310
Helix 32	AD5	W	107	110	Right-handed 310
Helix 33	AD6	W	116	122	Right-handed alpha
Helix 34	AD7	W	174	184	Right-handed alpha
Helix 35	AD8	W	214	218	Right-handed 310

There are 22 sheets in PDB entry 9VVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	35	36	first strand
Strand 2	O	58	64	parallel
Strand 3	O	87	93	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	52	first strand
Strand 2	I	299	314	parallel
Strand 3	I	319	332	anti-parallel
Strand 4	I	98	105	anti-parallel
Strand 5	O	70	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	64	first strand
Strand 2	I	87	93	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	R	98	105	anti-parallel
Strand 3	R	319	332	anti-parallel
Strand 4	R	299	314	anti-parallel
Strand 5	R	49	52	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	161	164	first strand
Strand 2	I	339	342	parallel
Strand 3	I	289	295	anti-parallel
Strand 4	I	202	206	anti-parallel
Strand 5	I	243	246	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	49	52	first strand
Strand 2	K	299	314	parallel
Strand 3	K	319	332	anti-parallel
Strand 4	K	98	103	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	64	first strand
Strand 2	K	87	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	161	164	first strand
Strand 2	K	338	342	parallel
Strand 3	K	289	295	anti-parallel
Strand 4	K	202	206	anti-parallel
Strand 5	K	242	246	parallel
Strand 6	K	236	239	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	30	first strand
Strand 2	R	58	64	parallel
Strand 3	L	35	36	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	30	first strand
Strand 2	R	58	64	parallel
Strand 3	R	87	93	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	49	52	first strand
Strand 2	L	299	314	parallel
Strand 3	L	319	332	anti-parallel
Strand 4	L	98	105	anti-parallel
Strand 5	R	70	71	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	64	first strand
Strand 2	L	87	93	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	71	first strand
Strand 2	T	98	104	anti-parallel
Strand 3	T	319	332	anti-parallel
Strand 4	T	299	314	anti-parallel
Strand 5	T	49	52	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	161	164	first strand
Strand 2	L	338	342	parallel
Strand 3	L	291	295	anti-parallel
Strand 4	L	202	206	anti-parallel
Strand 5	L	244	246	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	49	52	first strand
Strand 2	O	299	314	parallel
Strand 3	O	319	332	anti-parallel
Strand 4	O	98	105	anti-parallel
Strand 5	W	70	71	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	161	164	first strand
Strand 2	O	338	342	parallel
Strand 3	O	289	295	anti-parallel
Strand 4	O	202	206	anti-parallel
Strand 5	O	243	246	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	161	164	first strand
Strand 2	R	338	342	parallel
Strand 3	R	289	295	anti-parallel
Strand 4	R	202	206	anti-parallel
Strand 5	R	243	246	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	87	93	first strand
Strand 2	T	58	64	anti-parallel
Strand 3	W	35	36	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	70	71	first strand
Strand 2	W	98	105	anti-parallel
Strand 3	W	319	332	anti-parallel
Strand 4	W	299	314	anti-parallel
Strand 5	W	49	52	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	161	164	first strand
Strand 2	T	338	342	parallel
Strand 3	T	289	295	anti-parallel
Strand 4	T	202	206	anti-parallel
Strand 5	T	243	246	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	58	64	first strand
Strand 2	W	87	93	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	161	164	first strand
Strand 2	W	338	342	parallel
Strand 3	W	291	295	anti-parallel
Strand 4	W	202	206	anti-parallel
Strand 5	W	244	246	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVQ