Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VVR entry

There are 36 chains in PDB entry 9VVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 132
B
 SER 2GLU 141
C
 SER 2ALA 122
D
 SER 2SER 132
E
 SER 2GLU 141
F
 SER 2ALA 122
G
 SER 2SER 132
H
 SER 2SER 132
I
 SER 2SER 132
J
 SER 2GLU 141
K
 SER 2GLU 141
L
 SER 2GLU 141
M
 SER 2ALA 122
N
 SER 2ALA 122
O
 SER 2ALA 122
P
 SER 2SER 132
Q
 SER 2GLU 141
R
 SER 2ALA 122
S
 PRO 2VAL 785
V
 PRO 2VAL 785
X
 PRO 2VAL 785
Z
 PRO 2VAL 785
b
 PRO 2VAL 785
d
 PRO 2VAL 785
T
 ALA 2ASP 188
U
 MET 1ASP 188
W
 MET 1ASP 188
Y
 ALA 2ASP 188
a
 MET 1ASP 188
c
 MET 1ASP 188
e
 MET 1ASP 188
f
 ALA 2ASP 188
g
 MET 1ASP 188
h
 ALA 2ASP 188
i
 ALA 2ASP 188
j
 ALA 2ASP 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 9VVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 132Right-handed alpha
Helix 2
AA2
B
35 39Right-handed 310
Helix 3
AA3
B
89 141Right-handed alpha
Helix 4
AA4
C
35 39Right-handed 310
Helix 5
AA5
C
89 122Right-handed alpha
Helix 6
AA6
D
90 132Right-handed alpha
Helix 7
AA7
E
22 24Right-handed 310
Helix 8
AA8
E
89 141Right-handed alpha
Helix 9
AA9
F
22 24Right-handed 310
Helix 10
AB1
F
35 39Right-handed 310
Helix 11
AB2
F
89 122Right-handed alpha
Helix 12
AB3
G
89 130Right-handed alpha
Helix 13
AB4
H
89 132Right-handed alpha
Helix 14
AB5
I
89 132Right-handed alpha
Helix 15
AB6
J
22 24Right-handed 310
Helix 16
AB7
J
35 39Right-handed 310
Helix 17
AB8
J
89 141Right-handed alpha
Helix 18
AB9
K
22 24Right-handed 310
Helix 19
AC1
K
89 141Right-handed alpha
Helix 20
AC2
L
22 24Right-handed 310
Helix 21
AC3
L
89 141Right-handed alpha
Helix 22
AC4
M
35 39Right-handed 310
Helix 23
AC5
M
89 122Right-handed alpha
Helix 24
AC6
N
22 24Right-handed 310
Helix 25
AC7
N
35 39Right-handed 310
Helix 26
AC8
N
89 122Right-handed alpha
Helix 27
AC9
O
22 24Right-handed 310
Helix 28
AD1
O
35 39Right-handed 310
Helix 29
AD2
O
89 122Right-handed alpha
Helix 30
AD3
P
89 132Right-handed alpha
Helix 31
AD4
Q
89 141Right-handed alpha
Helix 32
AD5
R
35 39Right-handed 310
Helix 33
AD6
R
89 122Right-handed alpha
Helix 34
AD7
S
19 23Right-handed 310
Helix 35
AD8
S
107 111Right-handed alpha
Helix 36
AD9
S
183 187Right-handed 310
Helix 37
AE1
S
188 204Right-handed alpha
Helix 38
AE2
S
249 253Right-handed 310
Helix 39
AE3
S
300 304Right-handed 310
Helix 40
AE4
S
613 617Right-handed 310
Helix 41
AE5
V
183 187Right-handed 310
Helix 42
AE6
V
188 204Right-handed alpha
Helix 43
AE7
V
249 253Right-handed 310
Helix 44
AE8
V
300 304Right-handed 310
Helix 45
AE9
V
613 617Right-handed 310
Helix 46
AF1
X
183 187Right-handed 310
Helix 47
AF2
X
188 204Right-handed alpha
Helix 48
AF3
X
249 253Right-handed 310
Helix 49
AF4
X
300 304Right-handed 310
Helix 50
AF5
X
613 617Right-handed 310
Helix 51
AF6
Z
19 23Right-handed 310
Helix 52
AF7
Z
107 110Right-handed 310
Helix 53
AF8
Z
183 187Right-handed 310
Helix 54
AF9
Z
188 204Right-handed alpha
Helix 55
AG1
Z
249 253Right-handed 310
Helix 56
AG2
Z
300 304Right-handed 310
Helix 57
AG3
Z
613 617Right-handed 310
Helix 58
AG4
b
183 187Right-handed 310
Helix 59
AG5
b
188 204Right-handed alpha
Helix 60
AG6
b
249 253Right-handed 310
Helix 61
AG7
b
300 304Right-handed 310
Helix 62
AG8
b
613 617Right-handed 310
Helix 63
AG9
d
19 23Right-handed 310
Helix 64
AH1
d
142 144Right-handed 310
Helix 65
AH2
d
183 187Right-handed 310
Helix 66
AH3
d
188 204Right-handed alpha
Helix 67
AH4
d
249 253Right-handed 310
Helix 68
AH5
d
300 304Right-handed 310
Helix 69
AH6
d
337 342Right-handed 310
Helix 70
AH7
d
613 617Right-handed 310
Helix 71
AH8
T
10 22Right-handed alpha
Helix 72
AH9
T
35 54Right-handed alpha
Helix 73
AI1
T
124 128Right-handed 310
Helix 74
AI2
T
129 149Right-handed alpha
Helix 75
AI3
T
157 177Right-handed alpha
Helix 76
AI4
U
10 22Right-handed alpha
Helix 77
AI5
U
35 54Right-handed alpha
Helix 78
AI6
U
124 128Right-handed 310
Helix 79
AI7
U
129 149Right-handed alpha
Helix 80
AI8
U
157 177Right-handed alpha
Helix 81
AI9
W
10 22Right-handed alpha
Helix 82
AJ1
W
35 54Right-handed alpha
Helix 83
AJ2
W
124 128Right-handed 310
Helix 84
AJ3
W
129 149Right-handed alpha
Helix 85
AJ4
W
157 177Right-handed alpha
Helix 86
AJ5
Y
10 22Right-handed alpha
Helix 87
AJ6
Y
35 54Right-handed alpha
Helix 88
AJ7
Y
124 128Right-handed 310
Helix 89
AJ8
Y
129 149Right-handed alpha
Helix 90
AJ9
Y
157 177Right-handed alpha
Helix 91
AK1
a
10 22Right-handed alpha
Helix 92
AK2
a
35 54Right-handed alpha
Helix 93
AK3
a
124 128Right-handed 310
Helix 94
AK4
a
129 149Right-handed alpha
Helix 95
AK5
a
157 177Right-handed alpha
Helix 96
AK6
c
10 22Right-handed alpha
Helix 97
AK7
c
35 54Right-handed alpha
Helix 98
AK8
c
124 128Right-handed 310
Helix 99
AK9
c
129 149Right-handed alpha
Helix 100
AL1
c
157 177Right-handed alpha
Helix 101
AL2
e
10 22Right-handed alpha
Helix 102
AL3
e
35 54Right-handed alpha
Helix 103
AL4
e
129 149Right-handed alpha
Helix 104
AL5
e
157 177Right-handed alpha
Helix 105
AL6
f
12 22Right-handed alpha
Helix 106
AL7
f
35 54Right-handed alpha
Helix 107
AL8
f
124 128Right-handed 310
Helix 108
AL9
f
129 149Right-handed alpha
Helix 109
AM1
f
157 177Right-handed alpha
Helix 110
AM2
g
10 22Right-handed alpha
Helix 111
AM3
g
35 54Right-handed alpha
Helix 112
AM4
g
124 128Right-handed 310
Helix 113
AM5
g
129 149Right-handed alpha
Helix 114
AM6
g
157 177Right-handed alpha
Helix 115
AM7
h
12 22Right-handed alpha
Helix 116
AM8
h
35 54Right-handed alpha
Helix 117
AM9
h
124 128Right-handed 310
Helix 118
AN1
h
129 149Right-handed alpha
Helix 119
AN2
h
157 177Right-handed alpha
Helix 120
AN3
i
12 22Right-handed alpha
Helix 121
AN4
i
35 54Right-handed alpha
Helix 122
AN5
i
124 128Right-handed 310
Helix 123
AN6
i
129 149Right-handed alpha
Helix 124
AN7
i
157 177Right-handed alpha
Helix 125
AN8
j
10 22Right-handed alpha
Helix 126
AN9
j
35 54Right-handed alpha
Helix 127
AO1
j
124 128Right-handed 310
Helix 128
AO2
j
129 148Right-handed alpha
Helix 129
AO3
j
157 177Right-handed alpha
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