Analysis of interatomic Contacts of Structural Units in PDB entry:
9VVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VVU entry

There are 2 chains in PDB entry 9VVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 321
B
 MET 1LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9VVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
17 26Right-handed alpha
Helix 3
AA3
A
28 44Right-handed alpha
Helix 4
AA4
A
58 87Right-handed alpha
Helix 5
AA5
A
97 104Right-handed alpha
Helix 6
AA6
A
104 116Right-handed alpha
Helix 7
AA7
A
127 129Right-handed 310
Helix 8
AA8
A
130 137Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
183 188Right-handed alpha
Helix 11
AB2
A
205 213Right-handed alpha
Helix 12
AB3
A
215 217Right-handed 310
Helix 13
AB4
A
224 236Right-handed alpha
Helix 14
AB5
A
246 252Right-handed alpha
Helix 15
AB6
A
280 290Right-handed alpha
Helix 16
AB7
A
291 301Right-handed alpha
Helix 17
AB8
B
2 16Right-handed alpha
Helix 18
AB9
B
17 26Right-handed alpha
Helix 19
AC1
B
28 44Right-handed alpha
Helix 20
AC2
B
58 85Right-handed alpha
Helix 21
AC3
B
97 104Right-handed alpha
Helix 22
AC4
B
104 116Right-handed alpha
Helix 23
AC5
B
127 129Right-handed 310
Helix 24
AC6
B
130 137Right-handed alpha
Helix 25
AC7
B
174 179Right-handed alpha
Helix 26
AC8
B
183 189Right-handed alpha
Helix 27
AC9
B
195 200Right-handed 310
Helix 28
AD1
B
203 213Right-handed alpha
Helix 29
AD2
B
215 217Right-handed 310
Helix 30
AD3
B
224 236Right-handed alpha
Helix 31
AD4
B
246 252Right-handed alpha
Helix 32
AD5
B
280 290Right-handed alpha
Helix 33
AD6
B
291 302Right-handed alpha
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There are 6 sheets in PDB entry 9VVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
54 57anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
156 170anti-parallel
Strand 3
A
264 274anti-parallel
Strand 4
A
142 145anti-parallel
Strand 5
A
90 96parallel
Strand 6
A
119 125parallel
Strand 7
B
310 319anti-parallel
Strand 8
A
310 319anti-parallel
Strand 9
B
119 125anti-parallel
Strand 10
B
90 96parallel
Strand 11
B
142 145parallel
Strand 12
B
264 274anti-parallel
Strand 13
B
156 170anti-parallel
Strand 14
B
238 242anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
156 170anti-parallel
Strand 3
A
264 274anti-parallel
Strand 4
A
142 145anti-parallel
Strand 5
A
90 96parallel
Strand 6
A
119 125parallel
Strand 7
B
310 319anti-parallel
Strand 8
A
310 319anti-parallel
Strand 9
B
119 125anti-parallel
Strand 10
B
90 96parallel
Strand 11
B
142 145parallel
Strand 12
B
264 274anti-parallel
Strand 13
B
156 170anti-parallel
Strand 14
B
256 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
219 221parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 51first strand
Strand 2
B
54 57anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
219 221parallel
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