Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VWA entry

There are 8 chains in PDB entry 9VWA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 402
B	MET 1	LYS 402
C	MET 1	LYS 402
D	MET 1	LYS 402
E	MET 1	LYS 402
F	MET 1	LYS 402
G	MET 1	LYS 402
H	MET 1	LYS 402

There are168 helices in PDB entry 9VWA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	18	Right-handed alpha
Helix 2	AA2	A	19	21	Right-handed 310
Helix 3	AA3	A	36	47	Right-handed alpha
Helix 4	AA4	A	53	57	Right-handed 310
Helix 5	AA5	A	71	90	Right-handed alpha
Helix 6	AA6	A	96	104	Right-handed alpha
Helix 7	AA7	A	114	124	Right-handed alpha
Helix 8	AA8	A	131	140	Right-handed alpha
Helix 9	AA9	A	156	164	Right-handed alpha
Helix 10	AB1	A	179	194	Right-handed alpha
Helix 11	AB2	A	200	225	Right-handed alpha
Helix 12	AB3	A	229	237	Right-handed alpha
Helix 13	AB4	A	243	245	Right-handed 310
Helix 14	AB5	A	246	262	Right-handed alpha
Helix 15	AB6	A	272	291	Right-handed alpha
Helix 16	AB7	A	305	322	Right-handed alpha
Helix 17	AB8	A	323	345	Right-handed alpha
Helix 18	AB9	A	350	354	Right-handed 310
Helix 19	AC1	A	357	363	Right-handed alpha
Helix 20	AC2	A	366	376	Right-handed alpha
Helix 21	AC3	A	381	392	Right-handed alpha
Helix 22	AC4	B	3	18	Right-handed alpha
Helix 23	AC5	B	19	21	Right-handed 310
Helix 24	AC6	B	36	47	Right-handed alpha
Helix 25	AC7	B	53	57	Right-handed 310
Helix 26	AC8	B	71	90	Right-handed alpha
Helix 27	AC9	B	96	104	Right-handed alpha
Helix 28	AD1	B	114	124	Right-handed alpha
Helix 29	AD2	B	131	140	Right-handed alpha
Helix 30	AD3	B	156	164	Right-handed alpha
Helix 31	AD4	B	179	194	Right-handed alpha
Helix 32	AD5	B	200	226	Right-handed alpha
Helix 33	AD6	B	229	237	Right-handed alpha
Helix 34	AD7	B	241	245	Right-handed 310
Helix 35	AD8	B	246	262	Right-handed alpha
Helix 36	AD9	B	270	291	Right-handed alpha
Helix 37	AE1	B	305	322	Right-handed alpha
Helix 38	AE2	B	323	345	Right-handed alpha
Helix 39	AE3	B	350	354	Right-handed 310
Helix 40	AE4	B	359	363	Right-handed 310
Helix 41	AE5	B	366	376	Right-handed alpha
Helix 42	AE6	B	379	391	Right-handed alpha
Helix 43	AE7	C	3	18	Right-handed alpha
Helix 44	AE8	C	19	21	Right-handed 310
Helix 45	AE9	C	36	47	Right-handed alpha
Helix 46	AF1	C	51	57	Right-handed 310
Helix 47	AF2	C	71	90	Right-handed alpha
Helix 48	AF3	C	96	104	Right-handed alpha
Helix 49	AF4	C	114	124	Right-handed alpha
Helix 50	AF5	C	131	140	Right-handed alpha
Helix 51	AF6	C	156	164	Right-handed alpha
Helix 52	AF7	C	179	194	Right-handed alpha
Helix 53	AF8	C	200	213	Right-handed alpha
Helix 54	AF9	C	215	226	Right-handed alpha
Helix 55	AG1	C	229	237	Right-handed alpha
Helix 56	AG2	C	241	245	Right-handed 310
Helix 57	AG3	C	246	262	Right-handed alpha
Helix 58	AG4	C	270	291	Right-handed alpha
Helix 59	AG5	C	305	319	Right-handed alpha
Helix 60	AG6	C	323	345	Right-handed alpha
Helix 61	AG7	C	350	354	Right-handed 310
Helix 62	AG8	C	366	376	Right-handed alpha
Helix 63	AG9	C	381	391	Right-handed alpha
Helix 64	AH1	D	3	18	Right-handed alpha
Helix 65	AH2	D	19	21	Right-handed 310
Helix 66	AH3	D	36	47	Right-handed alpha
Helix 67	AH4	D	53	57	Right-handed 310
Helix 68	AH5	D	71	90	Right-handed alpha
Helix 69	AH6	D	96	104	Right-handed alpha
Helix 70	AH7	D	114	124	Right-handed alpha
Helix 71	AH8	D	131	140	Right-handed alpha
Helix 72	AH9	D	156	163	Right-handed alpha
Helix 73	AI1	D	179	194	Right-handed alpha
Helix 74	AI2	D	200	213	Right-handed alpha
Helix 75	AI3	D	215	225	Right-handed alpha
Helix 76	AI4	D	229	239	Right-handed alpha
Helix 77	AI5	D	246	262	Right-handed alpha
Helix 78	AI6	D	270	291	Right-handed alpha
Helix 79	AI7	D	305	322	Right-handed alpha
Helix 80	AI8	D	323	345	Right-handed alpha
Helix 81	AI9	D	350	354	Right-handed 310
Helix 82	AJ1	D	357	362	Right-handed alpha
Helix 83	AJ2	D	366	376	Right-handed alpha
Helix 84	AJ3	D	381	392	Right-handed alpha
Helix 85	AJ4	E	3	16	Right-handed alpha
Helix 86	AJ5	E	17	21	Right-handed 310
Helix 87	AJ6	E	36	47	Right-handed alpha
Helix 88	AJ7	E	53	57	Right-handed 310
Helix 89	AJ8	E	71	90	Right-handed alpha
Helix 90	AJ9	E	96	104	Right-handed alpha
Helix 91	AK1	E	114	124	Right-handed alpha
Helix 92	AK2	E	131	143	Right-handed alpha
Helix 93	AK3	E	156	162	Right-handed alpha
Helix 94	AK4	E	179	194	Right-handed alpha
Helix 95	AK5	E	200	216	Right-handed alpha
Helix 96	AK6	E	216	225	Right-handed alpha
Helix 97	AK7	E	229	240	Right-handed alpha
Helix 98	AK8	E	241	245	Right-handed 310
Helix 99	AK9	E	246	262	Right-handed alpha
Helix 100	AL1	E	272	291	Right-handed alpha
Helix 101	AL2	E	305	322	Right-handed alpha
Helix 102	AL3	E	323	345	Right-handed alpha
Helix 103	AL4	E	350	354	Right-handed 310
Helix 104	AL5	E	357	362	Right-handed alpha
Helix 105	AL6	E	366	376	Right-handed alpha
Helix 106	AL7	E	381	392	Right-handed alpha
Helix 107	AL8	F	3	18	Right-handed alpha
Helix 108	AL9	F	19	21	Right-handed 310
Helix 109	AM1	F	36	47	Right-handed alpha
Helix 110	AM2	F	53	57	Right-handed 310
Helix 111	AM3	F	71	90	Right-handed alpha
Helix 112	AM4	F	96	104	Right-handed alpha
Helix 113	AM5	F	114	124	Right-handed alpha
Helix 114	AM6	F	131	143	Right-handed alpha
Helix 115	AM7	F	156	162	Right-handed alpha
Helix 116	AM8	F	179	194	Right-handed alpha
Helix 117	AM9	F	200	226	Right-handed alpha
Helix 118	AN1	F	229	237	Right-handed alpha
Helix 119	AN2	F	246	262	Right-handed alpha
Helix 120	AN3	F	270	291	Right-handed alpha
Helix 121	AN4	F	305	322	Right-handed alpha
Helix 122	AN5	F	323	345	Right-handed alpha
Helix 123	AN6	F	350	354	Right-handed 310
Helix 124	AN7	F	357	362	Right-handed alpha
Helix 125	AN8	F	366	376	Right-handed alpha
Helix 126	AN9	F	381	391	Right-handed alpha
Helix 127	AO1	G	3	18	Right-handed alpha
Helix 128	AO2	G	19	21	Right-handed 310
Helix 129	AO3	G	36	47	Right-handed alpha
Helix 130	AO4	G	53	57	Right-handed 310
Helix 131	AO5	G	71	90	Right-handed alpha
Helix 132	AO6	G	96	104	Right-handed alpha
Helix 133	AO7	G	114	124	Right-handed alpha
Helix 134	AO8	G	131	140	Right-handed alpha
Helix 135	AO9	G	156	162	Right-handed alpha
Helix 136	AP1	G	179	194	Right-handed alpha
Helix 137	AP2	G	200	225	Right-handed alpha
Helix 138	AP3	G	229	237	Right-handed alpha
Helix 139	AP4	G	241	245	Right-handed 310
Helix 140	AP5	G	246	262	Right-handed alpha
Helix 141	AP6	G	270	291	Right-handed alpha
Helix 142	AP7	G	305	322	Right-handed alpha
Helix 143	AP8	G	323	345	Right-handed alpha
Helix 144	AP9	G	350	354	Right-handed 310
Helix 145	AQ1	G	357	363	Right-handed alpha
Helix 146	AQ2	G	366	376	Right-handed alpha
Helix 147	AQ3	G	379	392	Right-handed alpha
Helix 148	AQ4	H	3	18	Right-handed alpha
Helix 149	AQ5	H	19	21	Right-handed 310
Helix 150	AQ6	H	36	47	Right-handed alpha
Helix 151	AQ7	H	53	57	Right-handed 310
Helix 152	AQ8	H	71	90	Right-handed alpha
Helix 153	AQ9	H	96	104	Right-handed alpha
Helix 154	AR1	H	114	124	Right-handed alpha
Helix 155	AR2	H	131	143	Right-handed alpha
Helix 156	AR3	H	156	164	Right-handed alpha
Helix 157	AR4	H	179	194	Right-handed alpha
Helix 158	AR5	H	200	216	Right-handed alpha
Helix 159	AR6	H	216	225	Right-handed alpha
Helix 160	AR7	H	229	238	Right-handed alpha
Helix 161	AR8	H	246	262	Right-handed alpha
Helix 162	AR9	H	272	291	Right-handed alpha
Helix 163	AS1	H	305	322	Right-handed alpha
Helix 164	AS2	H	323	345	Right-handed alpha
Helix 165	AS3	H	350	354	Right-handed 310
Helix 166	AS4	H	357	362	Right-handed alpha
Helix 167	AS5	H	366	376	Right-handed alpha
Helix 168	AS6	H	379	392	Right-handed alpha

There are 8 sheets in PDB entry 9VWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	300	302	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	299	302	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	299	302	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	295	first strand
Strand 2	D	300	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	296	first strand
Strand 2	E	299	302	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	296	first strand
Strand 2	F	299	302	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	296	first strand
Strand 2	G	299	302	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	293	295	first strand
Strand 2	H	300	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VWA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWA