Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VWC entry

There are 8 chains in PDB entry 9VWC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 402
B	MET 1	LYS 402
C	MET 1	LYS 402
D	MET 1	LYS 402
E	MET 1	LYS 402
F	MET 1	LYS 402
G	MET 1	LYS 402
H	MET 1	LYS 402

There are191 helices in PDB entry 9VWC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	18	Right-handed alpha
Helix 2	AA2	A	19	21	Right-handed 310
Helix 3	AA3	A	36	47	Right-handed alpha
Helix 4	AA4	A	48	53	Right-handed alpha
Helix 5	AA5	A	54	57	Right-handed 310
Helix 6	AA6	A	71	90	Right-handed alpha
Helix 7	AA7	A	96	104	Right-handed alpha
Helix 8	AA8	A	114	124	Right-handed alpha
Helix 9	AA9	A	125	128	Right-handed 310
Helix 10	AB1	A	131	140	Right-handed alpha
Helix 11	AB2	A	156	164	Right-handed alpha
Helix 12	AB3	A	179	193	Right-handed alpha
Helix 13	AB4	A	200	215	Right-handed alpha
Helix 14	AB5	A	216	225	Right-handed alpha
Helix 15	AB6	A	229	239	Right-handed alpha
Helix 16	AB7	A	246	262	Right-handed alpha
Helix 17	AB8	A	270	291	Right-handed alpha
Helix 18	AB9	A	305	321	Right-handed alpha
Helix 19	AC1	A	323	345	Right-handed alpha
Helix 20	AC2	A	350	354	Right-handed 310
Helix 21	AC3	A	357	362	Right-handed alpha
Helix 22	AC4	A	366	376	Right-handed alpha
Helix 23	AC5	A	379	391	Right-handed alpha
Helix 24	AC6	A	394	398	Right-handed 310
Helix 25	AC7	B	3	18	Right-handed alpha
Helix 26	AC8	B	19	21	Right-handed 310
Helix 27	AC9	B	36	47	Right-handed alpha
Helix 28	AD1	B	48	53	Right-handed alpha
Helix 29	AD2	B	54	57	Right-handed 310
Helix 30	AD3	B	71	90	Right-handed alpha
Helix 31	AD4	B	96	104	Right-handed alpha
Helix 32	AD5	B	115	124	Right-handed alpha
Helix 33	AD6	B	125	128	Right-handed 310
Helix 34	AD7	B	131	140	Right-handed alpha
Helix 35	AD8	B	156	164	Right-handed alpha
Helix 36	AD9	B	179	193	Right-handed alpha
Helix 37	AE1	B	200	215	Right-handed alpha
Helix 38	AE2	B	216	225	Right-handed alpha
Helix 39	AE3	B	229	239	Right-handed alpha
Helix 40	AE4	B	242	245	Right-handed 310
Helix 41	AE5	B	246	262	Right-handed alpha
Helix 42	AE6	B	270	291	Right-handed alpha
Helix 43	AE7	B	305	321	Right-handed alpha
Helix 44	AE8	B	323	345	Right-handed alpha
Helix 45	AE9	B	350	354	Right-handed 310
Helix 46	AF1	B	357	362	Right-handed alpha
Helix 47	AF2	B	366	376	Right-handed alpha
Helix 48	AF3	B	379	392	Right-handed alpha
Helix 49	AF4	B	394	398	Right-handed 310
Helix 50	AF5	C	3	18	Right-handed alpha
Helix 51	AF6	C	19	21	Right-handed 310
Helix 52	AF7	C	36	47	Right-handed alpha
Helix 53	AF8	C	53	57	Right-handed 310
Helix 54	AF9	C	71	90	Right-handed alpha
Helix 55	AG1	C	96	104	Right-handed alpha
Helix 56	AG2	C	114	124	Right-handed alpha
Helix 57	AG3	C	125	128	Right-handed 310
Helix 58	AG4	C	131	140	Right-handed alpha
Helix 59	AG5	C	156	161	Right-handed alpha
Helix 60	AG6	C	179	192	Right-handed alpha
Helix 61	AG7	C	200	215	Right-handed alpha
Helix 62	AG8	C	216	225	Right-handed alpha
Helix 63	AG9	C	229	239	Right-handed alpha
Helix 64	AH1	C	246	262	Right-handed alpha
Helix 65	AH2	C	270	291	Right-handed alpha
Helix 66	AH3	C	305	321	Right-handed alpha
Helix 67	AH4	C	323	345	Right-handed alpha
Helix 68	AH5	C	350	354	Right-handed 310
Helix 69	AH6	C	357	362	Right-handed alpha
Helix 70	AH7	C	366	376	Right-handed alpha
Helix 71	AH8	C	379	391	Right-handed alpha
Helix 72	AH9	C	394	398	Right-handed 310
Helix 73	AI1	D	3	18	Right-handed alpha
Helix 74	AI2	D	19	21	Right-handed 310
Helix 75	AI3	D	36	47	Right-handed alpha
Helix 76	AI4	D	48	53	Right-handed alpha
Helix 77	AI5	D	54	57	Right-handed 310
Helix 78	AI6	D	71	90	Right-handed alpha
Helix 79	AI7	D	96	104	Right-handed alpha
Helix 80	AI8	D	114	124	Right-handed alpha
Helix 81	AI9	D	131	140	Right-handed alpha
Helix 82	AJ1	D	156	163	Right-handed alpha
Helix 83	AJ2	D	179	194	Right-handed alpha
Helix 84	AJ3	D	200	225	Right-handed alpha
Helix 85	AJ4	D	229	239	Right-handed alpha
Helix 86	AJ5	D	246	262	Right-handed alpha
Helix 87	AJ6	D	270	291	Right-handed alpha
Helix 88	AJ7	D	305	321	Right-handed alpha
Helix 89	AJ8	D	323	345	Right-handed alpha
Helix 90	AJ9	D	350	354	Right-handed 310
Helix 91	AK1	D	357	362	Right-handed alpha
Helix 92	AK2	D	366	376	Right-handed alpha
Helix 93	AK3	D	379	392	Right-handed alpha
Helix 94	AK4	D	394	398	Right-handed 310
Helix 95	AK5	E	3	18	Right-handed alpha
Helix 96	AK6	E	19	21	Right-handed 310
Helix 97	AK7	E	36	47	Right-handed alpha
Helix 98	AK8	E	48	53	Right-handed alpha
Helix 99	AK9	E	54	57	Right-handed 310
Helix 100	AL1	E	71	90	Right-handed alpha
Helix 101	AL2	E	96	104	Right-handed alpha
Helix 102	AL3	E	115	124	Right-handed alpha
Helix 103	AL4	E	131	140	Right-handed alpha
Helix 104	AL5	E	156	163	Right-handed alpha
Helix 105	AL6	E	179	193	Right-handed alpha
Helix 106	AL7	E	200	215	Right-handed alpha
Helix 107	AL8	E	216	225	Right-handed alpha
Helix 108	AL9	E	229	240	Right-handed alpha
Helix 109	AM1	E	242	245	Right-handed 310
Helix 110	AM2	E	246	262	Right-handed alpha
Helix 111	AM3	E	270	291	Right-handed alpha
Helix 112	AM4	E	305	321	Right-handed alpha
Helix 113	AM5	E	323	345	Right-handed alpha
Helix 114	AM6	E	350	354	Right-handed 310
Helix 115	AM7	E	357	362	Right-handed alpha
Helix 116	AM8	E	366	376	Right-handed alpha
Helix 117	AM9	E	379	391	Right-handed alpha
Helix 118	AN1	E	394	398	Right-handed 310
Helix 119	AN2	F	3	18	Right-handed alpha
Helix 120	AN3	F	19	21	Right-handed 310
Helix 121	AN4	F	36	47	Right-handed alpha
Helix 122	AN5	F	48	53	Right-handed alpha
Helix 123	AN6	F	54	57	Right-handed 310
Helix 124	AN7	F	71	90	Right-handed alpha
Helix 125	AN8	F	96	104	Right-handed alpha
Helix 126	AN9	F	112	124	Right-handed alpha
Helix 127	AO1	F	125	128	Right-handed 310
Helix 128	AO2	F	131	140	Right-handed alpha
Helix 129	AO3	F	156	163	Right-handed alpha
Helix 130	AO4	F	179	194	Right-handed alpha
Helix 131	AO5	F	200	215	Right-handed alpha
Helix 132	AO6	F	216	225	Right-handed alpha
Helix 133	AO7	F	229	239	Right-handed alpha
Helix 134	AO8	F	246	262	Right-handed alpha
Helix 135	AO9	F	270	291	Right-handed alpha
Helix 136	AP1	F	305	322	Right-handed alpha
Helix 137	AP2	F	323	345	Right-handed alpha
Helix 138	AP3	F	350	354	Right-handed 310
Helix 139	AP4	F	357	362	Right-handed alpha
Helix 140	AP5	F	366	376	Right-handed alpha
Helix 141	AP6	F	379	392	Right-handed alpha
Helix 142	AP7	F	394	398	Right-handed 310
Helix 143	AP8	G	3	18	Right-handed alpha
Helix 144	AP9	G	19	21	Right-handed 310
Helix 145	AQ1	G	36	47	Right-handed alpha
Helix 146	AQ2	G	48	53	Right-handed alpha
Helix 147	AQ3	G	54	57	Right-handed 310
Helix 148	AQ4	G	71	90	Right-handed alpha
Helix 149	AQ5	G	96	104	Right-handed alpha
Helix 150	AQ6	G	114	124	Right-handed alpha
Helix 151	AQ7	G	125	128	Right-handed 310
Helix 152	AQ8	G	131	140	Right-handed alpha
Helix 153	AQ9	G	156	164	Right-handed alpha
Helix 154	AR1	G	179	194	Right-handed alpha
Helix 155	AR2	G	200	215	Right-handed alpha
Helix 156	AR3	G	216	225	Right-handed alpha
Helix 157	AR4	G	229	240	Right-handed alpha
Helix 158	AR5	G	246	262	Right-handed alpha
Helix 159	AR6	G	270	291	Right-handed alpha
Helix 160	AR7	G	307	321	Right-handed alpha
Helix 161	AR8	G	323	345	Right-handed alpha
Helix 162	AR9	G	350	354	Right-handed 310
Helix 163	AS1	G	357	362	Right-handed alpha
Helix 164	AS2	G	366	376	Right-handed alpha
Helix 165	AS3	G	379	391	Right-handed alpha
Helix 166	AS4	G	394	398	Right-handed 310
Helix 167	AS5	H	3	18	Right-handed alpha
Helix 168	AS6	H	19	21	Right-handed 310
Helix 169	AS7	H	38	47	Right-handed alpha
Helix 170	AS8	H	48	53	Right-handed alpha
Helix 171	AS9	H	54	57	Right-handed 310
Helix 172	AT1	H	71	90	Right-handed alpha
Helix 173	AT2	H	96	104	Right-handed alpha
Helix 174	AT3	H	112	114	Right-handed 310
Helix 175	AT4	H	115	124	Right-handed alpha
Helix 176	AT5	H	131	140	Right-handed alpha
Helix 177	AT6	H	156	164	Right-handed alpha
Helix 178	AT7	H	179	193	Right-handed alpha
Helix 179	AT8	H	200	215	Right-handed alpha
Helix 180	AT9	H	216	225	Right-handed alpha
Helix 181	AU1	H	229	240	Right-handed alpha
Helix 182	AU2	H	242	245	Right-handed 310
Helix 183	AU3	H	246	262	Right-handed alpha
Helix 184	AU4	H	270	291	Right-handed alpha
Helix 185	AU5	H	305	321	Right-handed alpha
Helix 186	AU6	H	323	345	Right-handed alpha
Helix 187	AU7	H	350	354	Right-handed 310
Helix 188	AU8	H	357	362	Right-handed alpha
Helix 189	AU9	H	366	376	Right-handed alpha
Helix 190	AV1	H	379	392	Right-handed alpha
Helix 191	AV2	H	394	398	Right-handed 310

There are 8 sheets in PDB entry 9VWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	299	302	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	299	302	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	296	first strand
Strand 2	C	299	302	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	296	first strand
Strand 2	D	299	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	293	296	first strand
Strand 2	E	299	302	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	295	first strand
Strand 2	F	300	302	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	293	295	first strand
Strand 2	G	300	302	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	293	296	first strand
Strand 2	H	299	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VWC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWC