Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VWF entry

There are 9 chains in PDB entry 9VWF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	ASP 510
H	GLU 1	VAL 120
L	VAL 3	LYS 107
B	GLN 26	ASP 510
D	GLU 1	VAL 120
F	VAL 3	LYS 107
C	GLN 26	ASP 510
E	GLU 1	VAL 120
G	VAL 3	LYS 107

There are 39 helices in PDB entry 9VWF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	97	Right-handed alpha
Helix 2	AA2	A	149	159	Right-handed alpha
Helix 3	AA3	A	164	171	Right-handed alpha
Helix 4	AA4	A	195	200	Right-handed alpha
Helix 5	AA5	A	203	208	Right-handed alpha
Helix 6	AA6	A	216	241	Right-handed alpha
Helix 7	AA7	A	253	261	Right-handed alpha
Helix 8	AA8	A	267	277	Right-handed alpha
Helix 9	AA9	A	277	284	Right-handed alpha
Helix 10	AB1	A	380	385	Right-handed alpha
Helix 11	AB2	A	473	478	Right-handed 310
Helix 12	AB3	A	479	483	Right-handed 310
Helix 13	AB4	A	492	508	Right-handed alpha
Helix 14	AB5	B	73	97	Right-handed alpha
Helix 15	AB6	B	149	159	Right-handed alpha
Helix 16	AB7	B	164	171	Right-handed alpha
Helix 17	AB8	B	195	200	Right-handed alpha
Helix 18	AB9	B	203	208	Right-handed alpha
Helix 19	AC1	B	216	241	Right-handed alpha
Helix 20	AC2	B	253	261	Right-handed alpha
Helix 21	AC3	B	267	277	Right-handed alpha
Helix 22	AC4	B	277	284	Right-handed alpha
Helix 23	AC5	B	380	385	Right-handed alpha
Helix 24	AC6	B	473	478	Right-handed 310
Helix 25	AC7	B	479	483	Right-handed 310
Helix 26	AC8	B	492	508	Right-handed alpha
Helix 27	AC9	C	73	97	Right-handed alpha
Helix 28	AD1	C	149	159	Right-handed alpha
Helix 29	AD2	C	164	171	Right-handed alpha
Helix 30	AD3	C	195	200	Right-handed alpha
Helix 31	AD4	C	203	208	Right-handed alpha
Helix 32	AD5	C	216	241	Right-handed alpha
Helix 33	AD6	C	253	261	Right-handed alpha
Helix 34	AD7	C	267	277	Right-handed alpha
Helix 35	AD8	C	277	284	Right-handed alpha
Helix 36	AD9	C	380	385	Right-handed alpha
Helix 37	AE1	C	473	478	Right-handed 310
Helix 38	AE2	C	479	483	Right-handed 310
Helix 39	AE3	C	492	508	Right-handed alpha

There are 36 sheets in PDB entry 9VWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	45	49	parallel
Strand 4	A	309	318	anti-parallel
Strand 5	A	340	344	anti-parallel
Strand 6	A	349	352	anti-parallel
Strand 7	A	373	375	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	45	49	parallel
Strand 4	A	309	318	anti-parallel
Strand 5	A	38	41	anti-parallel
Strand 6	A	30	33	anti-parallel
Strand 7	A	466	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	180	first strand
Strand 2	A	186	194	anti-parallel
Strand 3	A	52	60	parallel
Strand 4	A	296	304	anti-parallel
Strand 5	A	286	291	anti-parallel
Strand 6	A	243	244	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	394	398	anti-parallel
Strand 3	A	490	491	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	411	416	anti-parallel
Strand 3	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	449	452	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	109	112	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	20	first strand
Strand 2	L	74	78	anti-parallel
Strand 3	L	64	67	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	56	first strand
Strand 2	L	47	51	anti-parallel
Strand 3	L	37	40	anti-parallel
Strand 4	L	87	89	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	94	first strand
Strand 2	L	99	102	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	45	49	parallel
Strand 4	B	309	318	anti-parallel
Strand 5	B	340	344	anti-parallel
Strand 6	B	349	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	45	49	parallel
Strand 4	B	309	318	anti-parallel
Strand 5	B	38	41	anti-parallel
Strand 6	B	30	33	anti-parallel
Strand 7	B	466	469	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	B	52	60	parallel
Strand 4	B	296	304	anti-parallel
Strand 5	B	286	291	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	394	398	anti-parallel
Strand 3	B	490	491	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	109	112	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	116	118	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	20	first strand
Strand 2	F	74	78	anti-parallel
Strand 3	F	64	67	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	47	51	anti-parallel
Strand 3	F	37	40	anti-parallel
Strand 4	F	87	89	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	99	102	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	45	49	parallel
Strand 4	C	309	318	anti-parallel
Strand 5	C	340	344	anti-parallel
Strand 6	C	349	352	anti-parallel
Strand 7	C	373	375	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	45	49	parallel
Strand 4	C	309	318	anti-parallel
Strand 5	C	38	41	anti-parallel
Strand 6	C	30	33	anti-parallel
Strand 7	C	466	469	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	180	first strand
Strand 2	C	186	194	anti-parallel
Strand 3	C	52	60	parallel
Strand 4	C	296	304	anti-parallel
Strand 5	C	286	291	anti-parallel
Strand 6	C	243	244	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	394	398	anti-parallel
Strand 3	C	490	491	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	411	416	anti-parallel
Strand 3	C	438	443	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	449	452	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	109	112	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	34	39	anti-parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	116	118	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	20	first strand
Strand 2	G	74	78	anti-parallel
Strand 3	G	64	67	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	56	first strand
Strand 2	G	47	51	anti-parallel
Strand 3	G	37	40	anti-parallel
Strand 4	G	87	89	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	99	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VWF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWF