Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VWM entry

There are 12 chains in PDB entry 9VWM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ILE 1	VAL 502
C	ILE 1	VAL 502
F	ALA 1	SER 75
D	ALA 1	SER 75
K	GLU 1	SER 123
L	SER 1	LEU 108
I	GLU 1	SER 123
J	SER 1	LEU 108
A	ILE 1	VAL 502
B	ALA 1	SER 75
G	GLU 1	SER 123
H	SER 1	LEU 108

There are 55 helices in PDB entry 9VWM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	82	86	Right-handed 310
Helix 2	AA2	E	148	152	Right-handed 310
Helix 3	AA3	E	197	199	Right-handed 310
Helix 4	AA4	E	216	220	Right-handed 310
Helix 5	AA5	E	238	241	Right-handed 310
Helix 6	AA6	E	261	269	Right-handed alpha
Helix 7	AA7	E	391	395	Right-handed 310
Helix 8	AA8	E	405	424	Right-handed alpha
Helix 9	AA9	E	426	432	Right-handed 310
Helix 10	AB1	E	436	458	Right-handed alpha
Helix 11	AB2	E	461	478	Right-handed alpha
Helix 12	AB3	E	482	501	Right-handed alpha
Helix 13	AB4	C	82	86	Right-handed 310
Helix 14	AB5	C	148	152	Right-handed 310
Helix 15	AB6	C	197	200	Right-handed 310
Helix 16	AB7	C	215	220	Right-handed alpha
Helix 17	AB8	C	239	241	Right-handed 310
Helix 18	AB9	C	261	269	Right-handed alpha
Helix 19	AC1	C	391	395	Right-handed 310
Helix 20	AC2	C	405	424	Right-handed alpha
Helix 21	AC3	C	425	432	Right-handed 310
Helix 22	AC4	C	436	457	Right-handed alpha
Helix 23	AC5	C	461	478	Right-handed alpha
Helix 24	AC6	C	482	501	Right-handed alpha
Helix 25	AC7	F	21	25	Right-handed 310
Helix 26	AC8	F	26	39	Right-handed alpha
Helix 27	AC9	F	40	46	Right-handed alpha
Helix 28	AD1	F	48	53	Right-handed alpha
Helix 29	AD2	F	56	74	Right-handed alpha
Helix 30	AD3	D	6	11	Right-handed 310
Helix 31	AD4	D	26	39	Right-handed alpha
Helix 32	AD5	D	41	54	Right-handed alpha
Helix 33	AD6	D	56	74	Right-handed alpha
Helix 34	AD7	K	53	56	Right-handed 310
Helix 35	AD8	L	26	30	Right-handed 310
Helix 36	AD9	I	53	56	Right-handed 310
Helix 37	AE1	I	62	65	Right-handed 310
Helix 38	AE2	J	26	30	Right-handed 310
Helix 39	AE3	A	82	86	Right-handed 310
Helix 40	AE4	A	148	152	Right-handed 310
Helix 41	AE5	A	197	200	Right-handed 310
Helix 42	AE6	A	216	220	Right-handed 310
Helix 43	AE7	A	238	241	Right-handed 310
Helix 44	AE8	A	261	269	Right-handed alpha
Helix 45	AE9	A	405	424	Right-handed alpha
Helix 46	AF1	A	425	432	Right-handed 310
Helix 47	AF2	A	436	457	Right-handed alpha
Helix 48	AF3	A	461	478	Right-handed alpha
Helix 49	AF4	A	482	501	Right-handed alpha
Helix 50	AF5	B	21	25	Right-handed 310
Helix 51	AF6	B	26	39	Right-handed alpha
Helix 52	AF7	B	40	46	Right-handed alpha
Helix 53	AF8	B	56	74	Right-handed alpha
Helix 54	AF9	G	53	56	Right-handed 310
Helix 55	AG1	H	26	30	Right-handed 310

There are 46 sheets in PDB entry 9VWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	31	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	135	142	anti-parallel
Strand 5	E	164	169	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	31	35	parallel
Strand 3	E	38	50	anti-parallel
Strand 4	E	281	284	anti-parallel
Strand 5	E	276	278	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	291	294	anti-parallel
Strand 3	E	187	190	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	60	first strand
Strand 2	E	124	129	anti-parallel
Strand 3	E	201	204	anti-parallel
Strand 4	E	211	214	anti-parallel
Strand 5	E	273	274	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	73	first strand
Strand 2	E	110	120	anti-parallel
Strand 3	E	90	98	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	245	first strand
Strand 2	E	255	257	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	332	anti-parallel
Strand 3	E	319	320	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	312	314	first strand
Strand 2	E	326	332	anti-parallel
Strand 3	E	372	379	anti-parallel
Strand 4	E	357	358	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	E	364	365	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	345	346	first strand
Strand 2	E	384	387	anti-parallel
Strand 3	E	399	401	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	49	anti-parallel
Strand 4	C	136	142	anti-parallel
Strand 5	C	164	169	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	291	294	anti-parallel
Strand 3	C	187	190	anti-parallel
Strand 4	C	175	177	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	127	129	anti-parallel
Strand 3	C	202	204	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	73	first strand
Strand 2	C	112	125	anti-parallel
Strand 3	C	90	95	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	273	274	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	246	first strand
Strand 2	C	254	257	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	281	283	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	372	378	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	384	389	anti-parallel
Strand 3	C	396	401	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	23	first strand
Strand 2	K	78	82	anti-parallel
Strand 3	K	69	73	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	60	first strand
Strand 2	K	46	52	anti-parallel
Strand 3	K	34	38	anti-parallel
Strand 4	K	94	98	anti-parallel
Strand 5	K	112	113	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	107	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	69	74	anti-parallel
Strand 3	L	61	66	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	44	47	first strand
Strand 2	L	33	37	anti-parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	23	first strand
Strand 2	I	78	83	anti-parallel
Strand 3	I	68	73	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	38	anti-parallel
Strand 4	I	94	98	anti-parallel
Strand 5	I	112	113	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	103	107	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	33	37	anti-parallel
Strand 5	J	44	47	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	103	107	parallel
Strand 3	J	84	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	21	first strand
Strand 2	J	69	74	anti-parallel
Strand 3	J	62	66	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	281	284	anti-parallel
Strand 5	A	276	278	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	291	294	anti-parallel
Strand 3	A	187	190	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	54	60	anti-parallel
Strand 4	A	225	227	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	110	121	anti-parallel
Strand 3	A	90	98	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	273	274	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	246	first strand
Strand 2	A	254	257	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	319	320	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	378	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	384	389	anti-parallel
Strand 3	A	396	401	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	78	83	anti-parallel
Strand 3	G	68	73	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	60	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	34	38	anti-parallel
Strand 4	G	94	98	anti-parallel
Strand 5	G	112	113	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	104	107	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	69	74	anti-parallel
Strand 3	H	61	66	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	47	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	97	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VWM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWM