Analysis of interatomic Contacts of Structural Units in PDB entry:
9VWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VWX entry

There is 1 chain in PDB entry 9VWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9VWX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
36 44Right-handed alpha
Helix 3
AA3
A
54 59Right-handed alpha
Helix 4
AA4
A
60 68Right-handed alpha
Helix 5
AA5
A
75 91Right-handed alpha
Helix 6
AA6
A
134 140Right-handed alpha
Helix 7
AA7
A
156 167Right-handed alpha
Helix 8
AA8
A
168 170Right-handed 310
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
201 207Right-handed 310
Helix 11
AB2
A
208 217Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
235 238Right-handed 310
Helix 14
AB5
A
261 270Right-handed alpha
Helix 15
AB6
A
272 280Right-handed alpha
Helix 16
AB7
A
285 292Right-handed alpha
Helix 17
AB8
A
347 349Right-handed 310
Helix 18
AB9
A
376 393Right-handed alpha
Helix 19
AC1
A
393 403Right-handed alpha
Helix 20
AC2
A
403 417Right-handed alpha
Helix 21
AC3
A
429 442Right-handed alpha
Helix 22
AC4
A
446 450Right-handed 310
Helix 23
AC5
A
452 461Right-handed alpha
Helix 24
AC6
A
465 470Right-handed 310
Helix 25
AC7
A
479 491Right-handed alpha
Helix 26
AC8
A
494 505Right-handed alpha
Helix 27
AC9
A
508 516Right-handed alpha
Helix 28
AD1
A
526 532Right-handed 310
Helix 29
AD2
A
533 548Right-handed alpha
Helix 30
AD3
A
558 569Right-handed alpha
Helix 31
AD4
A
569 576Right-handed alpha
Helix 32
AD5
A
577 579Right-handed 310
Helix 33
AD6
A
587 599Right-handed alpha
Helix 34
AD7
A
633 641Right-handed alpha
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There are 9 sheets in PDB entry 9VWX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
27 31parallel
Strand 3
A
2 7parallel
Strand 4
A
118 126parallel
Strand 5
A
109 113anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
335 338parallel
Strand 8
A
342 343anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
27 31parallel
Strand 3
A
2 7parallel
Strand 4
A
118 126parallel
Strand 5
A
363 365parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
329 331anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 298first strand
Strand 2
A
172 176parallel
Strand 3
A
149 152parallel
Strand 4
A
322 324parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
256 259parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
192 195anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
310 313anti-parallel
Strand 3
A
316 319anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
356 357anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
427 428parallel
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