Analysis of interatomic Contacts of Structural Units in PDB entry:
9VX1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VX1 entry

There are 6 chains in PDB entry 9VX1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 486
B	GLY 161	VAL 413
Z	A 1	G 6
D	MET 1	ILE 486
E	GLY 161	VAL 413
a	A 1	G 6

There are 46 helices in PDB entry 9VX1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	23	32	Right-handed alpha
Helix 3	AA3	A	49	64	Right-handed alpha
Helix 4	AA4	A	105	114	Right-handed alpha
Helix 5	AA5	A	117	138	Right-handed alpha
Helix 6	AA6	A	151	164	Right-handed alpha
Helix 7	AA7	A	181	190	Right-handed alpha
Helix 8	AA8	A	201	206	Right-handed alpha
Helix 9	AA9	A	212	218	Right-handed alpha
Helix 10	AB1	A	225	243	Right-handed alpha
Helix 11	AB2	A	308	328	Right-handed alpha
Helix 12	AB3	A	343	358	Right-handed alpha
Helix 13	AB4	A	430	440	Right-handed alpha
Helix 14	AB5	A	456	461	Right-handed alpha
Helix 15	AB6	A	462	470	Right-handed alpha
Helix 16	AB7	A	481	485	Right-handed 310
Helix 17	AB8	B	185	195	Right-handed alpha
Helix 18	AB9	B	216	220	Right-handed 310
Helix 19	AC1	B	227	231	Right-handed 310
Helix 20	AC2	B	236	241	Right-handed alpha
Helix 21	AC3	B	244	263	Right-handed alpha
Helix 22	AC4	B	354	360	Right-handed alpha
Helix 23	AC5	B	367	384	Right-handed alpha
Helix 24	AC6	D	16	18	Right-handed 310
Helix 25	AC7	D	23	32	Right-handed alpha
Helix 26	AC8	D	49	64	Right-handed alpha
Helix 27	AC9	D	105	114	Right-handed alpha
Helix 28	AD1	D	117	138	Right-handed alpha
Helix 29	AD2	D	151	164	Right-handed alpha
Helix 30	AD3	D	181	190	Right-handed alpha
Helix 31	AD4	D	201	206	Right-handed alpha
Helix 32	AD5	D	213	218	Right-handed alpha
Helix 33	AD6	D	225	243	Right-handed alpha
Helix 34	AD7	D	308	328	Right-handed alpha
Helix 35	AD8	D	343	358	Right-handed alpha
Helix 36	AD9	D	430	440	Right-handed alpha
Helix 37	AE1	D	456	461	Right-handed alpha
Helix 38	AE2	D	462	470	Right-handed alpha
Helix 39	AE3	D	481	485	Right-handed 310
Helix 40	AE4	E	185	195	Right-handed alpha
Helix 41	AE5	E	216	220	Right-handed 310
Helix 42	AE6	E	227	231	Right-handed 310
Helix 43	AE7	E	236	241	Right-handed alpha
Helix 44	AE8	E	244	263	Right-handed alpha
Helix 45	AE9	E	355	361	Right-handed alpha
Helix 46	AF1	E	367	384	Right-handed alpha

There are 16 sheets in PDB entry 9VX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	388	391	anti-parallel
Strand 3	A	396	399	anti-parallel
Strand 4	A	419	423	anti-parallel
Strand 5	A	361	369	anti-parallel
Strand 6	A	333	338	parallel
Strand 7	A	259	267	parallel
Strand 8	A	275	283	anti-parallel
Strand 9	A	288	295	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	13	14	anti-parallel
Strand 3	A	248	249	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	103	first strand
Strand 2	A	41	48	parallel
Strand 3	A	145	149	parallel
Strand 4	A	197	200	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	305	306	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	B	165	166	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	334	345	anti-parallel
Strand 3	B	318	329	anti-parallel
Strand 4	B	275	278	anti-parallel
Strand 5	B	267	270	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	334	345	anti-parallel
Strand 3	B	318	329	anti-parallel
Strand 4	B	297	304	anti-parallel
Strand 5	B	287	292	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	232	235	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	388	391	anti-parallel
Strand 3	D	396	398	anti-parallel
Strand 4	D	419	423	anti-parallel
Strand 5	D	361	369	anti-parallel
Strand 6	D	333	338	parallel
Strand 7	D	259	267	parallel
Strand 8	D	275	283	anti-parallel
Strand 9	D	288	295	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	13	14	anti-parallel
Strand 3	D	248	249	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	103	first strand
Strand 2	D	41	48	parallel
Strand 3	D	145	149	parallel
Strand 4	D	197	200	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	305	306	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	377	first strand
Strand 2	E	163	166	anti-parallel
Strand 3	E	408	410	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	170	first strand
Strand 2	E	334	345	anti-parallel
Strand 3	E	318	329	anti-parallel
Strand 4	E	297	304	anti-parallel
Strand 5	E	287	292	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	206	first strand
Strand 2	E	210	213	anti-parallel
Strand 3	E	176	181	anti-parallel
Strand 4	E	232	235	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	270	first strand
Strand 2	E	275	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VX1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VX1