Analysis of interatomic Contacts of Structural Units in PDB entry:
9VX6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VX6 entry

There are 18 chains in PDB entry 9VX6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	T 1	T 20
R	A 1	A 20
S	MET 1	TYR 484
T	THR 2	TRP 420
E	T 1	T 20
F	A 1	A 20
I	T 1	T 20
J	A 1	A 20
Q	T 1	T 20
M	C 6	T 16
N	U 6	C 16
O	MET 1	TYR 484
P	LYS 4	TRP 420
V	A 1	A 20
W	MET 1	TYR 484
Y	THR 2	TRP 420
U	MET 1	ILE 485
X	LYS 4	TRP 420

There are 99 helices in PDB entry 9VX6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	16	18	Right-handed 310
Helix 2	AA2	S	23	31	Right-handed alpha
Helix 3	AA3	S	49	66	Right-handed alpha
Helix 4	AA4	S	105	114	Right-handed alpha
Helix 5	AA5	S	120	139	Right-handed alpha
Helix 6	AA6	S	151	159	Right-handed alpha
Helix 7	AA7	S	181	190	Right-handed alpha
Helix 8	AA8	S	202	206	Right-handed alpha
Helix 9	AA9	S	225	243	Right-handed alpha
Helix 10	AB1	S	308	328	Right-handed alpha
Helix 11	AB2	S	346	358	Right-handed alpha
Helix 12	AB3	S	429	440	Right-handed alpha
Helix 13	AB4	S	455	469	Right-handed alpha
Helix 14	AB5	S	480	484	Right-handed 310
Helix 15	AB6	T	6	26	Right-handed alpha
Helix 16	AB7	T	82	91	Right-handed alpha
Helix 17	AB8	T	134	136	Right-handed 310
Helix 18	AB9	T	137	143	Right-handed alpha
Helix 19	AC1	T	189	194	Right-handed alpha
Helix 20	AC2	T	216	224	Right-handed 310
Helix 21	AC3	T	236	241	Right-handed alpha
Helix 22	AC4	T	247	262	Right-handed alpha
Helix 23	AC5	T	354	364	Right-handed alpha
Helix 24	AC6	T	367	382	Right-handed alpha
Helix 25	AC7	O	16	18	Right-handed 310
Helix 26	AC8	O	23	31	Right-handed alpha
Helix 27	AC9	O	49	65	Right-handed alpha
Helix 28	AD1	O	97	99	Right-handed 310
Helix 29	AD2	O	105	114	Right-handed alpha
Helix 30	AD3	O	121	139	Right-handed alpha
Helix 31	AD4	O	151	159	Right-handed alpha
Helix 32	AD5	O	181	190	Right-handed alpha
Helix 33	AD6	O	202	206	Right-handed alpha
Helix 34	AD7	O	225	243	Right-handed alpha
Helix 35	AD8	O	308	328	Right-handed alpha
Helix 36	AD9	O	343	358	Right-handed alpha
Helix 37	AE1	O	429	439	Right-handed alpha
Helix 38	AE2	O	455	469	Right-handed alpha
Helix 39	AE3	O	480	484	Right-handed 310
Helix 40	AE4	P	6	26	Right-handed alpha
Helix 41	AE5	P	82	91	Right-handed alpha
Helix 42	AE6	P	134	136	Right-handed 310
Helix 43	AE7	P	137	143	Right-handed alpha
Helix 44	AE8	P	185	194	Right-handed alpha
Helix 45	AE9	P	216	225	Right-handed 310
Helix 46	AF1	P	227	231	Right-handed 310
Helix 47	AF2	P	247	263	Right-handed alpha
Helix 48	AF3	P	354	366	Right-handed alpha
Helix 49	AF4	P	367	383	Right-handed alpha
Helix 50	AF5	P	416	420	Right-handed 310
Helix 51	AF6	W	16	18	Right-handed 310
Helix 52	AF7	W	23	31	Right-handed alpha
Helix 53	AF8	W	49	66	Right-handed alpha
Helix 54	AF9	W	105	114	Right-handed alpha
Helix 55	AG1	W	120	138	Right-handed alpha
Helix 56	AG2	W	151	159	Right-handed alpha
Helix 57	AG3	W	181	190	Right-handed alpha
Helix 58	AG4	W	202	206	Right-handed alpha
Helix 59	AG5	W	225	243	Right-handed alpha
Helix 60	AG6	W	308	328	Right-handed alpha
Helix 61	AG7	W	345	358	Right-handed alpha
Helix 62	AG8	W	429	440	Right-handed alpha
Helix 63	AG9	W	455	469	Right-handed alpha
Helix 64	AH1	W	480	484	Right-handed 310
Helix 65	AH2	Y	6	26	Right-handed alpha
Helix 66	AH3	Y	82	91	Right-handed alpha
Helix 67	AH4	Y	134	136	Right-handed 310
Helix 68	AH5	Y	137	143	Right-handed alpha
Helix 69	AH6	Y	144	146	Right-handed 310
Helix 70	AH7	Y	189	194	Right-handed alpha
Helix 71	AH8	Y	236	241	Right-handed alpha
Helix 72	AH9	Y	248	263	Right-handed alpha
Helix 73	AI1	Y	354	364	Right-handed alpha
Helix 74	AI2	Y	367	382	Right-handed alpha
Helix 75	AI3	Y	416	420	Right-handed 310
Helix 76	AI4	U	16	18	Right-handed 310
Helix 77	AI5	U	23	31	Right-handed alpha
Helix 78	AI6	U	49	65	Right-handed alpha
Helix 79	AI7	U	97	99	Right-handed 310
Helix 80	AI8	U	105	114	Right-handed alpha
Helix 81	AI9	U	121	138	Right-handed alpha
Helix 82	AJ1	U	151	159	Right-handed alpha
Helix 83	AJ2	U	181	190	Right-handed alpha
Helix 84	AJ3	U	201	206	Right-handed alpha
Helix 85	AJ4	U	225	243	Right-handed alpha
Helix 86	AJ5	U	308	328	Right-handed alpha
Helix 87	AJ6	U	343	358	Right-handed alpha
Helix 88	AJ7	U	429	439	Right-handed alpha
Helix 89	AJ8	U	455	469	Right-handed alpha
Helix 90	AJ9	U	480	484	Right-handed 310
Helix 91	AK1	X	6	26	Right-handed alpha
Helix 92	AK2	X	82	89	Right-handed alpha
Helix 93	AK3	X	90	92	Right-handed 310
Helix 94	AK4	X	134	138	Right-handed 310
Helix 95	AK5	X	185	196	Right-handed alpha
Helix 96	AK6	X	244	263	Right-handed alpha
Helix 97	AK7	X	354	364	Right-handed alpha
Helix 98	AK8	X	368	383	Right-handed alpha
Helix 99	AK9	X	416	420	Right-handed 310

There are 40 sheets in PDB entry 9VX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	7	first strand
Strand 2	S	387	390	anti-parallel
Strand 3	S	395	398	anti-parallel
Strand 4	S	418	422	anti-parallel
Strand 5	S	361	368	anti-parallel
Strand 6	S	333	338	parallel
Strand 7	S	258	267	parallel
Strand 8	S	274	283	anti-parallel
Strand 9	S	289	292	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	20	21	first strand
Strand 2	S	13	14	anti-parallel
Strand 3	S	248	249	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	93	103	first strand
Strand 2	S	41	48	parallel
Strand 3	S	145	150	parallel
Strand 4	S	197	201	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	375	377	first strand
Strand 2	T	162	166	anti-parallel
Strand 3	T	408	411	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	29	32	first strand
Strand 2	T	42	48	anti-parallel
Strand 3	T	51	64	anti-parallel
Strand 4	T	96	102	parallel
Strand 5	T	107	112	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	76	80	first strand
Strand 2	T	123	127	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	287	291	first strand
Strand 2	T	298	306	anti-parallel
Strand 3	T	317	329	anti-parallel
Strand 4	T	334	345	anti-parallel
Strand 5	T	170	172	anti-parallel
Strand 6	T	402	403	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	176	182	first strand
Strand 2	T	226	235	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	267	269	first strand
Strand 2	T	276	278	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	5	7	first strand
Strand 2	O	387	391	anti-parallel
Strand 3	O	394	398	anti-parallel
Strand 4	O	418	422	anti-parallel
Strand 5	O	361	368	anti-parallel
Strand 6	O	333	338	parallel
Strand 7	O	258	267	parallel
Strand 8	O	274	283	anti-parallel
Strand 9	O	289	293	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	20	21	first strand
Strand 2	O	13	14	anti-parallel
Strand 3	O	248	249	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	93	95	first strand
Strand 2	O	41	48	parallel
Strand 3	O	101	103	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	93	95	first strand
Strand 2	O	41	48	parallel
Strand 3	O	145	150	parallel
Strand 4	O	197	201	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	375	376	first strand
Strand 2	P	162	166	anti-parallel
Strand 3	P	408	411	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	43	45	first strand
Strand 2	P	56	64	anti-parallel
Strand 3	P	96	102	parallel
Strand 4	P	107	112	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	76	80	first strand
Strand 2	P	123	127	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	287	292	first strand
Strand 2	P	297	307	anti-parallel
Strand 3	P	315	329	anti-parallel
Strand 4	P	334	345	anti-parallel
Strand 5	P	168	172	anti-parallel
Strand 6	P	402	403	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	211	213	first strand
Strand 2	P	176	180	anti-parallel
Strand 3	P	232	235	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	267	269	first strand
Strand 2	P	276	278	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	5	7	first strand
Strand 2	W	387	391	anti-parallel
Strand 3	W	394	398	anti-parallel
Strand 4	W	418	422	anti-parallel
Strand 5	W	361	368	anti-parallel
Strand 6	W	333	338	parallel
Strand 7	W	258	267	parallel
Strand 8	W	274	283	anti-parallel
Strand 9	W	289	292	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	20	21	first strand
Strand 2	W	13	14	anti-parallel
Strand 3	W	248	249	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	93	103	first strand
Strand 2	W	41	48	parallel
Strand 3	W	145	150	parallel
Strand 4	W	197	201	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	375	377	first strand
Strand 2	Y	162	166	anti-parallel
Strand 3	Y	408	411	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	29	32	first strand
Strand 2	Y	42	48	anti-parallel
Strand 3	Y	51	64	anti-parallel
Strand 4	Y	96	102	parallel
Strand 5	Y	107	112	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	76	80	first strand
Strand 2	Y	123	127	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	327	329	first strand
Strand 2	Y	334	336	anti-parallel
Strand 3	Y	170	172	anti-parallel
Strand 4	Y	402	403	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	176	177	first strand
Strand 2	Y	234	235	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	180	182	first strand
Strand 2	Y	226	231	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	267	270	first strand
Strand 2	Y	275	278	anti-parallel
Strand 3	Y	317	324	anti-parallel
Strand 4	Y	303	306	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	267	270	first strand
Strand 2	Y	275	278	anti-parallel
Strand 3	Y	317	324	anti-parallel
Strand 4	Y	339	345	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	5	7	first strand
Strand 2	U	387	391	anti-parallel
Strand 3	U	394	398	anti-parallel
Strand 4	U	418	422	anti-parallel
Strand 5	U	361	368	anti-parallel
Strand 6	U	333	338	parallel
Strand 7	U	258	267	parallel
Strand 8	U	274	283	anti-parallel
Strand 9	U	289	292	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	20	21	first strand
Strand 2	U	13	14	anti-parallel
Strand 3	U	248	249	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	93	95	first strand
Strand 2	U	41	48	parallel
Strand 3	U	101	103	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	93	95	first strand
Strand 2	U	41	48	parallel
Strand 3	U	145	149	parallel
Strand 4	U	197	200	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	375	376	first strand
Strand 2	X	162	166	anti-parallel
Strand 3	X	408	411	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	29	32	first strand
Strand 2	X	42	47	anti-parallel
Strand 3	X	52	64	anti-parallel
Strand 4	X	96	102	parallel
Strand 5	X	107	112	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	76	80	first strand
Strand 2	X	123	127	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	287	292	first strand
Strand 2	X	297	307	anti-parallel
Strand 3	X	315	329	anti-parallel
Strand 4	X	334	345	anti-parallel
Strand 5	X	168	172	anti-parallel
Strand 6	X	402	403	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	210	211	first strand
Strand 2	X	176	181	anti-parallel
Strand 3	X	232	235	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	267	270	first strand
Strand 2	X	275	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VX6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VX6