Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VXH entry

There are 4 chains in PDB entry 9VXH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 2	SER 123
C	SER 21	VAL 339
D	LEU 2	SER 123
A	SER 21	VAL 339

There are 30 helices in PDB entry 9VXH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	32	Right-handed 310
Helix 2	AA2	B	62	65	Right-handed 310
Helix 3	AA3	B	87	91	Right-handed 310
Helix 4	AA4	B	100	104	Right-handed 310
Helix 5	AA5	B	106	110	Right-handed 310
Helix 6	AA6	C	43	53	Right-handed alpha
Helix 7	AA7	C	54	66	Right-handed alpha
Helix 8	AA8	C	75	80	Right-handed 310
Helix 9	AA9	C	87	92	Right-handed 310
Helix 10	AB1	C	97	104	Right-handed alpha
Helix 11	AB2	C	160	163	Right-handed 310
Helix 12	AB3	C	187	202	Right-handed alpha
Helix 13	AB4	C	252	254	Right-handed 310
Helix 14	AB5	C	267	278	Right-handed alpha
Helix 15	AB6	C	283	290	Right-handed alpha
Helix 16	AB7	D	28	32	Right-handed 310
Helix 17	AB8	D	62	65	Right-handed 310
Helix 18	AB9	D	87	91	Right-handed 310
Helix 19	AC1	D	100	104	Right-handed 310
Helix 20	AC2	D	106	110	Right-handed 310
Helix 21	AC3	A	43	53	Right-handed alpha
Helix 22	AC4	A	54	65	Right-handed alpha
Helix 23	AC5	A	76	80	Right-handed 310
Helix 24	AC6	A	88	92	Right-handed 310
Helix 25	AC7	A	97	104	Right-handed alpha
Helix 26	AC8	A	160	163	Right-handed 310
Helix 27	AC9	A	187	202	Right-handed alpha
Helix 28	AD1	A	252	254	Right-handed 310
Helix 29	AD2	A	267	278	Right-handed alpha
Helix 30	AD3	A	283	290	Right-handed alpha

There are 20 sheets in PDB entry 9VXH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	117	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	33	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	117	122	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	112	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	166	168	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	172	175	parallel
Strand 3	C	129	133	parallel
Strand 4	C	138	142	anti-parallel
Strand 5	C	109	111	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	156	158	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	180	first strand
Strand 2	C	327	337	anti-parallel
Strand 3	C	205	208	anti-parallel
Strand 4	C	211	212	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	180	first strand
Strand 2	C	327	337	anti-parallel
Strand 3	C	223	231	anti-parallel
Strand 4	C	238	240	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	248	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	C	321	323	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	304	307	anti-parallel
Strand 3	C	281	282	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	117	122	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	112	113	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	166	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	172	175	parallel
Strand 3	A	129	134	parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	109	111	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	156	158	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	327	337	anti-parallel
Strand 3	A	205	208	anti-parallel
Strand 4	A	211	212	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	327	337	anti-parallel
Strand 3	A	223	231	anti-parallel
Strand 4	A	238	240	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	321	323	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	304	307	anti-parallel
Strand 3	A	281	282	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VXH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXH