Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VXI entry

There are 4 chains in PDB entry 9VXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 90ASP 414
B
 GLU 82VAL 278
C
 MET 90ASP 414
D
 GLU 82VAL 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9VXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 97Right-handed alpha
Helix 2
AA2
A
99 114Right-handed alpha
Helix 3
AA3
A
118 129Right-handed alpha
Helix 4
AA4
A
135 153Right-handed alpha
Helix 5
AA5
A
158 182Right-handed alpha
Helix 6
AA6
A
193 199Right-handed alpha
Helix 7
AA7
A
199 222Right-handed alpha
Helix 8
AA8
A
223 247Right-handed alpha
Helix 9
AA9
A
254 266Right-handed alpha
Helix 10
AB1
A
266 282Right-handed alpha
Helix 11
AB2
A
284 313Right-handed alpha
Helix 12
AB3
A
323 328Right-handed alpha
Helix 13
AB4
A
332 339Right-handed alpha
Helix 14
AB5
A
343 351Right-handed alpha
Helix 15
AB6
A
357 369Right-handed alpha
Helix 16
AB7
A
370 390Right-handed alpha
Helix 17
AB8
A
391 393Right-handed 310
Helix 18
AB9
A
396 412Right-handed alpha
Helix 19
AC1
B
83 96Right-handed alpha
Helix 20
AC2
B
99 103Right-handed 310
Helix 21
AC3
B
107 124Right-handed alpha
Helix 22
AC4
B
129 132Right-handed 310
Helix 23
AC5
B
133 138Right-handed alpha
Helix 24
AC6
B
153 159Right-handed alpha
Helix 25
AC7
B
224 232Right-handed alpha
Helix 26
AC8
B
234 243Right-handed alpha
Helix 27
AC9
C
91 97Right-handed alpha
Helix 28
AD1
C
99 114Right-handed alpha
Helix 29
AD2
C
118 129Right-handed alpha
Helix 30
AD3
C
135 153Right-handed alpha
Helix 31
AD4
C
158 182Right-handed alpha
Helix 32
AD5
C
193 199Right-handed alpha
Helix 33
AD6
C
199 222Right-handed alpha
Helix 34
AD7
C
223 247Right-handed alpha
Helix 35
AD8
C
254 266Right-handed alpha
Helix 36
AD9
C
266 282Right-handed alpha
Helix 37
AE1
C
284 313Right-handed alpha
Helix 38
AE2
C
323 328Right-handed alpha
Helix 39
AE3
C
332 339Right-handed alpha
Helix 40
AE4
C
343 351Right-handed alpha
Helix 41
AE5
C
357 369Right-handed alpha
Helix 42
AE6
C
370 390Right-handed alpha
Helix 43
AE7
C
391 393Right-handed 310
Helix 44
AE8
C
396 412Right-handed alpha
Helix 45
AE9
D
83 96Right-handed alpha
Helix 46
AF1
D
99 103Right-handed 310
Helix 47
AF2
D
107 124Right-handed alpha
Helix 48
AF3
D
129 132Right-handed 310
Helix 49
AF4
D
133 138Right-handed alpha
Helix 50
AF5
D
153 159Right-handed alpha
Helix 51
AF6
D
224 232Right-handed alpha
Helix 52
AF7
D
234 243Right-handed alpha
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There are 4 sheets in PDB entry 9VXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 192anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
165 171anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
198 209anti-parallel
Strand 5
B
212 223anti-parallel
Strand 6
B
246 251anti-parallel
Strand 7
B
257 262anti-parallel
Strand 8
B
267 272anti-parallel
Strand 9
B
142 147anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 188first strand
Strand 2
C
191 192anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 147first strand
Strand 2
D
166 171anti-parallel
Strand 3
D
180 188anti-parallel
Strand 4
D
198 206anti-parallel
Strand 5
D
212 223anti-parallel
Strand 6
D
246 253anti-parallel
Strand 7
D
257 262anti-parallel
Strand 8
D
267 272anti-parallel
Strand 9
D
142 147anti-parallel
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