Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VXK entry

There is 1 chain in PDB entry 9VXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13PRO 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9VXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
60 69Right-handed alpha
Helix 3
AA3
A
133 139Right-handed alpha
Helix 4
AA4
A
141 155Right-handed alpha
Helix 5
AA5
A
169 182Right-handed alpha
Helix 6
AA6
A
193 195Right-handed 310
Helix 7
AA7
A
196 202Right-handed alpha
Helix 8
AA8
A
215 224Right-handed alpha
Helix 9
AA9
A
240 245Right-handed 310
Helix 10
AB1
A
270 275Right-handed 310
Helix 11
AB2
A
284 292Right-handed alpha
Helix 12
AB3
A
292 309Right-handed alpha
Helix 13
AB4
A
324 335Right-handed alpha
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There are 4 sheets in PDB entry 9VXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
36 41anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
83 92anti-parallel
Strand 4
A
104 110anti-parallel
Strand 5
A
125 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
340 344anti-parallel
Strand 4
A
316 321parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
186 191parallel
Strand 3
A
161 164parallel
Strand 4
A
232 234parallel
Strand 5
A
253 256parallel
Strand 6
A
279 282parallel
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