Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VXP entry

There are 4 chains in PDB entry 9VXP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 68	SER 574
B	THR 68	SER 574
C	THR 68	SER 574
D	THR 68	SER 574

There are 80 helices in PDB entry 9VXP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	74	Right-handed 310
Helix 2	AA2	A	100	111	Right-handed alpha
Helix 3	AA3	A	123	140	Right-handed alpha
Helix 4	AA4	A	144	148	Right-handed 310
Helix 5	AA5	A	204	210	Right-handed 310
Helix 6	AA6	A	266	279	Right-handed alpha
Helix 7	AA7	A	290	302	Right-handed alpha
Helix 8	AA8	A	316	322	Right-handed alpha
Helix 9	AA9	A	322	330	Right-handed alpha
Helix 10	AB1	A	348	364	Right-handed alpha
Helix 11	AB2	A	375	379	Right-handed 310
Helix 12	AB3	A	384	398	Right-handed alpha
Helix 13	AB4	A	413	431	Right-handed alpha
Helix 14	AB5	A	434	445	Right-handed alpha
Helix 15	AB6	A	450	467	Right-handed alpha
Helix 16	AB7	A	478	487	Right-handed alpha
Helix 17	AB8	A	499	506	Right-handed alpha
Helix 18	AB9	A	507	509	Right-handed 310
Helix 19	AC1	A	524	543	Right-handed alpha
Helix 20	AC2	B	70	74	Right-handed 310
Helix 21	AC3	B	100	111	Right-handed alpha
Helix 22	AC4	B	123	140	Right-handed alpha
Helix 23	AC5	B	144	148	Right-handed 310
Helix 24	AC6	B	204	210	Right-handed 310
Helix 25	AC7	B	266	279	Right-handed alpha
Helix 26	AC8	B	290	302	Right-handed alpha
Helix 27	AC9	B	316	322	Right-handed alpha
Helix 28	AD1	B	322	330	Right-handed alpha
Helix 29	AD2	B	348	364	Right-handed alpha
Helix 30	AD3	B	375	379	Right-handed 310
Helix 31	AD4	B	384	398	Right-handed alpha
Helix 32	AD5	B	405	410	Right-handed alpha
Helix 33	AD6	B	413	431	Right-handed alpha
Helix 34	AD7	B	434	445	Right-handed alpha
Helix 35	AD8	B	450	467	Right-handed alpha
Helix 36	AD9	B	478	487	Right-handed alpha
Helix 37	AE1	B	499	506	Right-handed alpha
Helix 38	AE2	B	507	509	Right-handed 310
Helix 39	AE3	B	524	543	Right-handed alpha
Helix 40	AE4	C	70	74	Right-handed 310
Helix 41	AE5	C	100	111	Right-handed alpha
Helix 42	AE6	C	123	140	Right-handed alpha
Helix 43	AE7	C	144	148	Right-handed 310
Helix 44	AE8	C	204	210	Right-handed 310
Helix 45	AE9	C	266	279	Right-handed alpha
Helix 46	AF1	C	290	302	Right-handed alpha
Helix 47	AF2	C	316	322	Right-handed alpha
Helix 48	AF3	C	322	330	Right-handed alpha
Helix 49	AF4	C	345	347	Right-handed 310
Helix 50	AF5	C	348	364	Right-handed alpha
Helix 51	AF6	C	375	379	Right-handed 310
Helix 52	AF7	C	384	398	Right-handed alpha
Helix 53	AF8	C	405	410	Right-handed alpha
Helix 54	AF9	C	413	431	Right-handed alpha
Helix 55	AG1	C	434	445	Right-handed alpha
Helix 56	AG2	C	450	467	Right-handed alpha
Helix 57	AG3	C	478	487	Right-handed alpha
Helix 58	AG4	C	499	506	Right-handed alpha
Helix 59	AG5	C	507	509	Right-handed 310
Helix 60	AG6	C	524	543	Right-handed alpha
Helix 61	AG7	D	70	74	Right-handed 310
Helix 62	AG8	D	100	111	Right-handed alpha
Helix 63	AG9	D	123	140	Right-handed alpha
Helix 64	AH1	D	144	148	Right-handed 310
Helix 65	AH2	D	204	210	Right-handed 310
Helix 66	AH3	D	266	279	Right-handed alpha
Helix 67	AH4	D	290	302	Right-handed alpha
Helix 68	AH5	D	316	322	Right-handed alpha
Helix 69	AH6	D	322	330	Right-handed alpha
Helix 70	AH7	D	345	347	Right-handed 310
Helix 71	AH8	D	348	364	Right-handed alpha
Helix 72	AH9	D	374	379	Right-handed 310
Helix 73	AI1	D	384	398	Right-handed alpha
Helix 74	AI2	D	413	431	Right-handed alpha
Helix 75	AI3	D	434	445	Right-handed alpha
Helix 76	AI4	D	450	467	Right-handed alpha
Helix 77	AI5	D	478	487	Right-handed alpha
Helix 78	AI6	D	499	506	Right-handed alpha
Helix 79	AI7	D	507	509	Right-handed 310
Helix 80	AI8	D	524	543	Right-handed alpha

There are 10 sheets in PDB entry 9VXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	114	118	parallel
Strand 3	A	152	156	parallel
Strand 4	A	282	285	parallel
Strand 5	A	309	313	parallel
Strand 6	A	332	335	parallel
Strand 7	A	367	369	parallel
Strand 8	A	401	404	parallel
Strand 9	A	89	93	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	182	186	parallel
Strand 3	A	236	240	anti-parallel
Strand 4	A	224	231	anti-parallel
Strand 5	A	216	219	anti-parallel
Strand 6	A	252	253	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	516	first strand
Strand 2	A	492	497	parallel
Strand 3	A	470	474	parallel
Strand 4	A	551	556	parallel
Strand 5	A	567	572	anti-parallel
Strand 6	B	567	572	anti-parallel
Strand 7	B	551	556	anti-parallel
Strand 8	B	470	474	parallel
Strand 9	B	492	497	parallel
Strand 10	B	512	516	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	114	118	parallel
Strand 3	B	152	156	parallel
Strand 4	B	282	285	parallel
Strand 5	B	309	313	parallel
Strand 6	B	332	335	parallel
Strand 7	B	367	369	parallel
Strand 8	B	401	404	parallel
Strand 9	B	89	93	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	182	186	parallel
Strand 3	B	236	240	anti-parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	216	219	anti-parallel
Strand 6	B	252	253	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	114	118	parallel
Strand 3	C	152	156	parallel
Strand 4	C	282	285	parallel
Strand 5	C	309	313	parallel
Strand 6	C	332	335	parallel
Strand 7	C	367	369	parallel
Strand 8	C	401	404	parallel
Strand 9	C	89	93	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	182	186	parallel
Strand 3	C	236	240	anti-parallel
Strand 4	C	224	231	anti-parallel
Strand 5	C	216	219	anti-parallel
Strand 6	C	252	253	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	516	first strand
Strand 2	C	492	497	parallel
Strand 3	C	470	474	parallel
Strand 4	C	551	556	parallel
Strand 5	C	567	572	anti-parallel
Strand 6	D	567	572	anti-parallel
Strand 7	D	551	555	anti-parallel
Strand 8	D	470	474	parallel
Strand 9	D	492	497	parallel
Strand 10	D	512	516	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	93	first strand
Strand 2	D	114	118	parallel
Strand 3	D	152	156	parallel
Strand 4	D	282	285	parallel
Strand 5	D	309	313	parallel
Strand 6	D	333	335	parallel
Strand 7	D	367	369	parallel
Strand 8	D	401	404	parallel
Strand 9	D	89	93	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	182	186	parallel
Strand 3	D	235	240	anti-parallel
Strand 4	D	224	232	anti-parallel
Strand 5	D	216	219	anti-parallel
Strand 6	D	252	253	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VXP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXP