Analysis of interatomic Contacts of Structural Units in PDB entry:
9VXT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VXT entry

There are 2 chains in PDB entry 9VXT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLU 336
B
 SER 4GLU 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9VXT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
45 70Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
A
91 105Right-handed alpha
Helix 5
AA5
A
118 134Right-handed alpha
Helix 6
AA6
A
140 150Right-handed alpha
Helix 7
AA7
A
157 183Right-handed alpha
Helix 8
AA8
A
184 186Right-handed 310
Helix 9
AA9
A
262 274Right-handed alpha
Helix 10
AB1
A
280 302Right-handed alpha
Helix 11
AB2
A
324 336Right-handed alpha
Helix 12
AB3
B
16 35Right-handed alpha
Helix 13
AB4
B
45 70Right-handed alpha
Helix 14
AB5
B
82 90Right-handed alpha
Helix 15
AB6
B
91 105Right-handed alpha
Helix 16
AB7
B
119 134Right-handed alpha
Helix 17
AB8
B
140 150Right-handed alpha
Helix 18
AB9
B
156 184Right-handed alpha
Helix 19
AC1
B
262 274Right-handed alpha
Helix 20
AC2
B
280 302Right-handed alpha
Helix 21
AC3
B
324 336Right-handed alpha
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There are 2 sheets in PDB entry 9VXT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
243 247anti-parallel
Strand 3
A
255 261anti-parallel
Strand 4
A
198 203parallel
Strand 5
A
309 314parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 223first strand
Strand 2
B
244 247anti-parallel
Strand 3
B
255 261anti-parallel
Strand 4
B
198 203parallel
Strand 5
B
309 314parallel
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