Analysis of interatomic Contacts of Structural Units in PDB entry:
9VY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VY1 entry

There are 5 chains in PDB entry 9VY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7GLU 1366
B
 ASP 317PRO 509
C
 ASP 317ARG 395
D
 ASP 317PRO 375
E
 ASP 317ILE 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9VY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
43 56Right-handed alpha
Helix 3
AA3
A
59 77Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
103 135Right-handed alpha
Helix 6
AA6
A
144 151Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
161 181Right-handed alpha
Helix 9
AA9
A
224 248Right-handed alpha
Helix 10
AB1
A
251 266Right-handed alpha
Helix 11
AB2
A
267 269Right-handed 310
Helix 12
AB3
A
272 274Right-handed 310
Helix 13
AB4
A
275 292Right-handed alpha
Helix 14
AB5
A
293 295Right-handed 310
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
302 319Right-handed alpha
Helix 17
AB8
A
325 339Right-handed alpha
Helix 18
AB9
A
348 353Right-handed 310
Helix 19
AC1
A
362 375Right-handed alpha
Helix 20
AC2
A
382 402Right-handed alpha
Helix 21
AC3
A
418 428Right-handed alpha
Helix 22
AC4
A
432 439Right-handed alpha
Helix 23
AC5
A
440 444Right-handed 310
Helix 24
AC6
A
472 480Right-handed 310
Helix 25
AC7
A
497 504Right-handed alpha
Helix 26
AC8
A
509 519Right-handed alpha
Helix 27
AC9
A
520 524Right-handed 310
Helix 28
AD1
A
550 566Right-handed alpha
Helix 29
AD2
A
567 573Right-handed 310
Helix 30
AD3
A
667 671Right-handed 310
Helix 31
AD4
A
672 688Right-handed alpha
Helix 32
AD5
A
694 700Right-handed alpha
Helix 33
AD6
A
721 725Right-handed 310
Helix 34
AD7
A
743 763Right-handed alpha
Helix 35
AD8
A
788 814Right-handed alpha
Helix 36
AD9
A
849 853Right-handed 310
Helix 37
AE1
A
863 881Right-handed alpha
Helix 38
AE2
A
884 906Right-handed alpha
Helix 39
AE3
A
913 922Right-handed alpha
Helix 40
AE4
A
924 933Right-handed alpha
Helix 41
AE5
A
934 938Right-handed 310
Helix 42
AE6
A
945 949Right-handed 310
Helix 43
AE7
A
955 971Right-handed alpha
Helix 44
AE8
A
975 981Right-handed alpha
Helix 45
AE9
A
990 997Right-handed alpha
Helix 46
AF1
A
1008 1024Right-handed alpha
Helix 47
AF2
A
1027 1031Right-handed 310
Helix 48
AF3
A
1038 1050Right-handed alpha
Helix 49
AF4
A
1056 1066Right-handed alpha
Helix 50
AF5
A
1067 1079Right-handed alpha
Helix 51
AF6
A
1082 1092Right-handed alpha
Helix 52
AF7
A
1096 1105Right-handed alpha
Helix 53
AF8
A
1105 1118Right-handed alpha
Helix 54
AF9
A
1132 1145Right-handed alpha
Helix 55
AG1
A
1145 1150Right-handed alpha
Helix 56
AG2
A
1161 1166Right-handed alpha
Helix 57
AG3
A
1307 1311Right-handed 310
Helix 58
AG4
A
1330 1348Right-handed alpha
Helix 59
AG5
B
318 369Right-handed alpha
Helix 60
AG6
B
458 471Right-handed alpha
Helix 61
AG7
B
474 486Right-handed alpha
Helix 62
AG8
B
490 508Right-handed alpha
Helix 63
AG9
C
318 374Right-handed alpha
Helix 64
AH1
D
318 371Right-handed alpha
Helix 65
AH2
E
318 368Right-handed alpha
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There are 7 sheets in PDB entry 9VY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
219 223parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
201 205anti-parallel
Strand 5
A
196 197anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 381first strand
Strand 2
E
371 374anti-parallel
Strand 3
B
395 399parallel
Strand 4
B
371 372anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
447 448anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
530 534anti-parallel
Strand 3
A
704 707parallel
Strand 4
A
731 733anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 771first strand
Strand 2
A
774 784anti-parallel
Strand 3
A
653 663anti-parallel
Strand 4
A
824 826anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 832first strand
Strand 2
A
835 838anti-parallel
Strand 3
A
841 843anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1167 1169first strand
Strand 2
A
1359 1364anti-parallel
Strand 3
A
1187 1192anti-parallel
Strand 4
A
1312 1316anti-parallel
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