Analysis of interatomic Contacts of Structural Units in PDB entry:
9VY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VY6 entry

There are 6 chains in PDB entry 9VY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4GLU 153
B
 PHE 5GLU 153
C
 ASP 2GLU 153
D
 PHE 5GLU 153
E
 PHE 5GLU 153
F
 PRO 6GLU 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9VY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
76 83Right-handed alpha
Helix 3
AA3
A
86 98Right-handed alpha
Helix 4
AA4
B
11 23Right-handed alpha
Helix 5
AA5
B
76 82Right-handed alpha
Helix 6
AA6
B
86 98Right-handed alpha
Helix 7
AA7
C
11 23Right-handed alpha
Helix 8
AA8
C
76 82Right-handed alpha
Helix 9
AA9
C
86 98Right-handed alpha
Helix 10
AB1
D
11 23Right-handed alpha
Helix 11
AB2
D
76 81Right-handed alpha
Helix 12
AB3
D
86 98Right-handed alpha
Helix 13
AB4
E
11 23Right-handed alpha
Helix 14
AB5
E
76 81Right-handed alpha
Helix 15
AB6
E
86 98Right-handed alpha
Helix 16
AB7
F
11 23Right-handed alpha
Helix 17
AB8
F
76 82Right-handed alpha
Helix 18
AB9
F
86 98Right-handed alpha
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There are 6 sheets in PDB entry 9VY6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 35first strand
Strand 2
A
38 47anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
64 71anti-parallel
Strand 5
A
101 109anti-parallel
Strand 6
A
115 122anti-parallel
Strand 7
A
128 134anti-parallel
Strand 8
A
140 150anti-parallel
Strand 9
A
25 35anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
128 134anti-parallel
Strand 4
B
140 150anti-parallel
Strand 5
B
26 35anti-parallel
Strand 6
B
38 47anti-parallel
Strand 7
B
51 58anti-parallel
Strand 8
B
64 71anti-parallel
Strand 9
B
106 110anti-parallel
Strand 10
B
115 122anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
52 58anti-parallel
Strand 3
C
69 71anti-parallel
Strand 4
C
102 109anti-parallel
Strand 5
C
115 122anti-parallel
Strand 6
C
128 134anti-parallel
Strand 7
C
140 150anti-parallel
Strand 8
C
26 35anti-parallel
Strand 9
C
38 46anti-parallel
Strand 10
C
52 58anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 145first strand
Strand 2
D
128 134anti-parallel
Strand 3
D
115 122anti-parallel
Strand 4
D
101 109anti-parallel
Strand 5
D
64 70anti-parallel
Strand 6
D
52 58anti-parallel
Strand 7
D
40 46anti-parallel
Strand 8
D
26 31anti-parallel
Strand 9
D
149 150anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 41first strand
Strand 2
E
26 34anti-parallel
Strand 3
E
140 150anti-parallel
Strand 4
E
128 134anti-parallel
Strand 5
E
115 121anti-parallel
Strand 6
E
102 109anti-parallel
Strand 7
E
64 71anti-parallel
Strand 8
E
52 57anti-parallel
Strand 9
E
43 46anti-parallel
Strand 10
E
26 34anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
26 34first strand
Strand 2
F
42 46anti-parallel
Strand 3
F
52 56anti-parallel
Strand 4
F
66 71anti-parallel
Strand 5
F
101 109anti-parallel
Strand 6
F
117 122anti-parallel
Strand 7
F
129 133anti-parallel
Strand 8
F
142 150anti-parallel
Strand 9
F
26 34anti-parallel
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