Analysis of interatomic Contacts of Structural Units in PDB entry:
9VYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VYD entry

There are 2 chains in PDB entry 9VYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 327
B
 ASP 1MET 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9VYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
18 31Right-handed alpha
Helix 3
AA3
A
33 41Right-handed alpha
Helix 4
AA4
A
46 71Right-handed alpha
Helix 5
AA5
A
74 96Right-handed alpha
Helix 6
AA6
A
105 123Right-handed alpha
Helix 7
AA7
A
124 126Right-handed 310
Helix 8
AA8
A
127 134Right-handed alpha
Helix 9
AA9
A
144 154Right-handed alpha
Helix 10
AB1
A
169 181Right-handed alpha
Helix 11
AB2
A
188 202Right-handed alpha
Helix 12
AB3
A
202 207Right-handed alpha
Helix 13
AB4
A
214 218Right-handed 310
Helix 14
AB5
A
228 238Right-handed alpha
Helix 15
AB6
A
241 245Right-handed 310
Helix 16
AB7
A
252 262Right-handed alpha
Helix 17
AB8
A
263 268Right-handed alpha
Helix 18
AB9
B
4 21Right-handed alpha
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There are 2 sheets in PDB entry 9VYD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
135 136parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
276 279parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
289 293anti-parallel
Strand 5
A
299 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il