Analysis of interatomic Contacts of Structural Units in PDB entry:
9VYE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VYE entry

There are 7 chains in PDB entry 9VYE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ASN 369
B	ALA 2	ASN 369
C	ALA 2	ASN 369
D	ALA 2	ASN 369
E	ALA 2	ASN 369
F	ALA 2	ASN 369
G	ALA 2	ASN 369

There are 92 helices in PDB entry 9VYE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	28	31	Right-handed 310
Helix 3	AA3	A	45	49	Right-handed 310
Helix 4	AA4	A	101	107	Right-handed alpha
Helix 5	AA5	A	110	136	Right-handed alpha
Helix 6	AA6	A	142	146	Right-handed 310
Helix 7	AA7	A	147	158	Right-handed alpha
Helix 8	AA8	A	173	179	Right-handed alpha
Helix 9	AA9	A	189	203	Right-handed alpha
Helix 10	AB1	A	225	238	Right-handed alpha
Helix 11	AB2	A	246	252	Right-handed alpha
Helix 12	AB3	A	279	283	Right-handed 310
Helix 13	AB4	A	362	367	Right-handed alpha
Helix 14	AB5	B	7	11	Right-handed 310
Helix 15	AB6	B	29	31	Right-handed 310
Helix 16	AB7	B	101	107	Right-handed alpha
Helix 17	AB8	B	110	136	Right-handed alpha
Helix 18	AB9	B	147	158	Right-handed alpha
Helix 19	AC1	B	166	168	Right-handed 310
Helix 20	AC2	B	173	179	Right-handed alpha
Helix 21	AC3	B	189	203	Right-handed alpha
Helix 22	AC4	B	225	237	Right-handed alpha
Helix 23	AC5	B	246	252	Right-handed alpha
Helix 24	AC6	B	279	283	Right-handed 310
Helix 25	AC7	B	362	367	Right-handed alpha
Helix 26	AC8	C	7	11	Right-handed 310
Helix 27	AC9	C	29	31	Right-handed 310
Helix 28	AD1	C	101	107	Right-handed alpha
Helix 29	AD2	C	110	136	Right-handed alpha
Helix 30	AD3	C	142	146	Right-handed 310
Helix 31	AD4	C	147	158	Right-handed alpha
Helix 32	AD5	C	173	179	Right-handed alpha
Helix 33	AD6	C	189	203	Right-handed alpha
Helix 34	AD7	C	225	236	Right-handed alpha
Helix 35	AD8	C	246	251	Right-handed alpha
Helix 36	AD9	C	251	256	Right-handed alpha
Helix 37	AE1	C	279	283	Right-handed 310
Helix 38	AE2	C	313	315	Right-handed 310
Helix 39	AE3	C	362	367	Right-handed alpha
Helix 40	AE4	D	7	11	Right-handed 310
Helix 41	AE5	D	29	31	Right-handed 310
Helix 42	AE6	D	45	49	Right-handed 310
Helix 43	AE7	D	101	107	Right-handed alpha
Helix 44	AE8	D	110	136	Right-handed alpha
Helix 45	AE9	D	142	146	Right-handed 310
Helix 46	AF1	D	147	158	Right-handed alpha
Helix 47	AF2	D	173	179	Right-handed alpha
Helix 48	AF3	D	189	202	Right-handed alpha
Helix 49	AF4	D	225	238	Right-handed alpha
Helix 50	AF5	D	246	251	Right-handed alpha
Helix 51	AF6	D	251	256	Right-handed alpha
Helix 52	AF7	D	279	283	Right-handed 310
Helix 53	AF8	D	313	315	Right-handed 310
Helix 54	AF9	D	362	367	Right-handed alpha
Helix 55	AG1	E	7	11	Right-handed 310
Helix 56	AG2	E	29	31	Right-handed 310
Helix 57	AG3	E	45	50	Right-handed alpha
Helix 58	AG4	E	101	107	Right-handed alpha
Helix 59	AG5	E	110	136	Right-handed alpha
Helix 60	AG6	E	147	158	Right-handed alpha
Helix 61	AG7	E	173	179	Right-handed alpha
Helix 62	AG8	E	189	203	Right-handed alpha
Helix 63	AG9	E	225	238	Right-handed alpha
Helix 64	AH1	E	246	256	Right-handed alpha
Helix 65	AH2	E	279	283	Right-handed 310
Helix 66	AH3	E	362	367	Right-handed alpha
Helix 67	AH4	F	7	11	Right-handed 310
Helix 68	AH5	F	28	32	Right-handed alpha
Helix 69	AH6	F	45	49	Right-handed 310
Helix 70	AH7	F	101	107	Right-handed alpha
Helix 71	AH8	F	110	136	Right-handed alpha
Helix 72	AH9	F	142	146	Right-handed 310
Helix 73	AI1	F	147	158	Right-handed alpha
Helix 74	AI2	F	164	168	Right-handed 310
Helix 75	AI3	F	173	180	Right-handed alpha
Helix 76	AI4	F	189	203	Right-handed alpha
Helix 77	AI5	F	225	237	Right-handed alpha
Helix 78	AI6	F	246	252	Right-handed alpha
Helix 79	AI7	F	279	283	Right-handed 310
Helix 80	AI8	F	362	367	Right-handed alpha
Helix 81	AI9	G	7	11	Right-handed 310
Helix 82	AJ1	G	29	31	Right-handed 310
Helix 83	AJ2	G	45	49	Right-handed 310
Helix 84	AJ3	G	101	107	Right-handed alpha
Helix 85	AJ4	G	110	136	Right-handed alpha
Helix 86	AJ5	G	142	146	Right-handed 310
Helix 87	AJ6	G	147	158	Right-handed alpha
Helix 88	AJ7	G	173	179	Right-handed alpha
Helix 89	AJ8	G	189	202	Right-handed alpha
Helix 90	AJ9	G	225	236	Right-handed alpha
Helix 91	AK1	G	279	283	Right-handed 310
Helix 92	AK2	G	362	367	Right-handed alpha

There are 32 sheets in PDB entry 9VYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	21	first strand
Strand 2	F	54	60	parallel
Strand 3	F	83	89	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	41	44	parallel
Strand 3	A	297	312	parallel
Strand 4	A	317	330	anti-parallel
Strand 5	A	91	100	anti-parallel
Strand 6	F	68	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	54	60	anti-parallel
Strand 3	B	13	21	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	348	355	parallel
Strand 3	A	285	292	anti-parallel
Strand 4	A	217	224	anti-parallel
Strand 5	A	211	214	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	348	355	parallel
Strand 3	A	285	292	anti-parallel
Strand 4	A	217	224	anti-parallel
Strand 5	A	264	268	parallel
Strand 6	A	259	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	343	345	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	41	44	parallel
Strand 3	B	297	312	parallel
Strand 4	B	317	330	anti-parallel
Strand 5	B	91	100	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	54	60	anti-parallel
Strand 3	C	13	15	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	54	60	anti-parallel
Strand 3	C	20	21	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	C	91	100	anti-parallel
Strand 3	C	317	330	anti-parallel
Strand 4	C	297	311	anti-parallel
Strand 5	C	41	44	parallel
Strand 6	C	33	34	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	164	first strand
Strand 2	B	348	355	parallel
Strand 3	B	285	292	anti-parallel
Strand 4	B	220	224	anti-parallel
Strand 5	B	264	268	parallel
Strand 6	B	259	261	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	343	345	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	54	60	anti-parallel
Strand 3	D	14	21	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	D	91	100	anti-parallel
Strand 3	D	317	330	anti-parallel
Strand 4	D	297	311	anti-parallel
Strand 5	D	41	44	parallel
Strand 6	D	33	34	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	348	355	parallel
Strand 3	C	285	292	anti-parallel
Strand 4	C	220	224	anti-parallel
Strand 5	C	264	268	parallel
Strand 6	C	259	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	344	345	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	54	60	anti-parallel
Strand 3	E	13	21	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	E	91	100	anti-parallel
Strand 3	E	317	330	anti-parallel
Strand 4	E	297	312	anti-parallel
Strand 5	E	41	44	parallel
Strand 6	E	33	34	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	348	355	parallel
Strand 3	D	285	292	anti-parallel
Strand 4	D	220	224	anti-parallel
Strand 5	D	264	268	parallel
Strand 6	D	259	261	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	343	345	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	89	first strand
Strand 2	E	54	60	anti-parallel
Strand 3	F	13	21	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	138	first strand
Strand 2	E	141	142	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	164	first strand
Strand 2	E	348	355	parallel
Strand 3	E	285	292	anti-parallel
Strand 4	E	220	224	anti-parallel
Strand 5	E	264	268	parallel
Strand 6	E	259	261	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	343	345	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	34	first strand
Strand 2	F	41	44	parallel
Strand 3	F	297	312	parallel
Strand 4	F	317	330	anti-parallel
Strand 5	F	91	100	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	259	261	first strand
Strand 2	F	264	268	anti-parallel
Strand 3	F	220	224	parallel
Strand 4	F	285	292	anti-parallel
Strand 5	F	348	355	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	333	first strand
Strand 2	F	344	345	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	34	first strand
Strand 2	G	41	44	parallel
Strand 3	G	297	312	parallel
Strand 4	G	317	330	anti-parallel
Strand 5	G	91	100	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	60	first strand
Strand 2	G	83	89	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	164	first strand
Strand 2	G	348	355	parallel
Strand 3	G	285	292	anti-parallel
Strand 4	G	218	224	anti-parallel
Strand 5	G	264	268	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	211	first strand
Strand 2	G	218	224	anti-parallel
Strand 3	G	285	292	anti-parallel
Strand 4	G	275	276	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	334	first strand
Strand 2	G	343	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VYE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VYE