Analysis of interatomic Contacts of Structural Units in PDB entry:
9VYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VYH entry

There are 6 chains in PDB entry 9VYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
m	ALA 116	ALA 745
n	ALA 116	ALA 745
o	ALA 116	THR 743
q	PRO 2	LEU 270
r	PRO 2	LEU 270
p	PRO 2	LEU 270

There are 56 helices in PDB entry 9VYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	m	116	139	Right-handed alpha
Helix 2	AA2	m	141	149	Right-handed alpha
Helix 3	AA3	m	150	159	Right-handed alpha
Helix 4	AA4	m	159	169	Right-handed alpha
Helix 5	AA5	m	169	179	Right-handed alpha
Helix 6	AA6	m	179	186	Right-handed alpha
Helix 7	AA7	m	324	329	Right-handed alpha
Helix 8	AA8	m	378	380	Right-handed 310
Helix 9	AA9	m	406	424	Right-handed alpha
Helix 10	AB1	m	441	445	Right-handed 310
Helix 11	AB2	m	458	478	Right-handed alpha
Helix 12	AB3	m	499	520	Right-handed alpha
Helix 13	AB4	m	540	552	Right-handed alpha
Helix 14	AB5	m	561	566	Right-handed 310
Helix 15	AB6	m	587	607	Right-handed alpha
Helix 16	AB7	m	650	652	Right-handed 310
Helix 17	AB8	n	117	149	Right-handed alpha
Helix 18	AB9	n	150	159	Right-handed alpha
Helix 19	AC1	n	159	169	Right-handed alpha
Helix 20	AC2	n	169	179	Right-handed alpha
Helix 21	AC3	n	179	186	Right-handed alpha
Helix 22	AC4	n	230	235	Right-handed alpha
Helix 23	AC5	n	324	329	Right-handed alpha
Helix 24	AC6	n	378	380	Right-handed 310
Helix 25	AC7	n	397	401	Right-handed 310
Helix 26	AC8	n	406	423	Right-handed alpha
Helix 27	AC9	n	440	445	Right-handed 310
Helix 28	AD1	n	458	478	Right-handed alpha
Helix 29	AD2	n	499	520	Right-handed alpha
Helix 30	AD3	n	540	553	Right-handed alpha
Helix 31	AD4	n	562	568	Right-handed 310
Helix 32	AD5	n	587	607	Right-handed alpha
Helix 33	AD6	n	649	654	Right-handed 310
Helix 34	AD7	o	117	149	Right-handed alpha
Helix 35	AD8	o	150	159	Right-handed alpha
Helix 36	AD9	o	159	169	Right-handed alpha
Helix 37	AE1	o	169	178	Right-handed alpha
Helix 38	AE2	o	324	329	Right-handed alpha
Helix 39	AE3	o	406	423	Right-handed alpha
Helix 40	AE4	o	458	478	Right-handed alpha
Helix 41	AE5	o	499	520	Right-handed alpha
Helix 42	AE6	o	540	552	Right-handed alpha
Helix 43	AE7	o	562	566	Right-handed 310
Helix 44	AE8	o	587	607	Right-handed alpha
Helix 45	AE9	q	22	30	Right-handed alpha
Helix 46	AF1	q	39	43	Right-handed 310
Helix 47	AF2	q	53	58	Right-handed alpha
Helix 48	AF3	q	254	269	Right-handed alpha
Helix 49	AF4	r	22	30	Right-handed alpha
Helix 50	AF5	r	53	58	Right-handed alpha
Helix 51	AF6	r	254	269	Right-handed alpha
Helix 52	AF7	p	22	30	Right-handed alpha
Helix 53	AF8	p	39	43	Right-handed 310
Helix 54	AF9	p	53	58	Right-handed alpha
Helix 55	AG1	p	211	215	Right-handed 310
Helix 56	AG2	p	254	270	Right-handed alpha

There are 34 sheets in PDB entry 9VYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	189	193	first strand
Strand 2	r	3	7	anti-parallel
Strand 3	m	204	206	parallel
Strand 4	m	212	216	anti-parallel
Strand 5	m	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	241	244	first strand
Strand 2	m	247	250	anti-parallel
Strand 3	m	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	275	280	first strand
Strand 2	m	283	288	anti-parallel
Strand 3	m	297	301	anti-parallel
Strand 4	m	307	309	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	382	387	first strand
Strand 2	m	350	355	anti-parallel
Strand 3	m	428	433	parallel
Strand 4	m	315	323	parallel
Strand 5	m	480	489	parallel
Strand 6	m	526	529	parallel
Strand 7	m	556	557	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	654	658	first strand
Strand 2	m	691	695	anti-parallel
Strand 3	m	738	743	anti-parallel
Strand 4	m	617	621	parallel
Strand 5	m	628	631	anti-parallel
Strand 6	m	676	681	anti-parallel
Strand 7	m	666	673	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	638	640	first strand
Strand 2	m	715	717	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	722	723	first strand
Strand 2	m	730	731	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	189	193	first strand
Strand 2	p	3	7	anti-parallel
Strand 3	n	203	206	parallel
Strand 4	n	212	216	anti-parallel
Strand 5	n	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	240	244	first strand
Strand 2	n	247	251	anti-parallel
Strand 3	n	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	275	280	first strand
Strand 2	n	283	288	anti-parallel
Strand 3	n	297	302	anti-parallel
Strand 4	n	306	309	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	382	387	first strand
Strand 2	n	350	355	anti-parallel
Strand 3	n	428	431	parallel
Strand 4	n	315	321	parallel
Strand 5	n	480	488	parallel
Strand 6	n	526	531	parallel
Strand 7	n	556	560	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	616	622	first strand
Strand 2	n	626	632	anti-parallel
Strand 3	n	676	680	anti-parallel
Strand 4	n	668	670	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	638	640	first strand
Strand 2	n	715	717	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	655	657	first strand
Strand 2	n	692	695	anti-parallel
Strand 3	n	738	741	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	722	723	first strand
Strand 2	n	730	731	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	189	193	first strand
Strand 2	q	3	7	anti-parallel
Strand 3	o	203	206	parallel
Strand 4	o	212	216	anti-parallel
Strand 5	o	222	224	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	240	244	first strand
Strand 2	o	247	251	anti-parallel
Strand 3	o	258	260	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	275	280	first strand
Strand 2	o	283	288	anti-parallel
Strand 3	o	297	301	anti-parallel
Strand 4	o	307	309	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	385	387	first strand
Strand 2	o	350	353	anti-parallel
Strand 3	o	428	435	parallel
Strand 4	o	315	323	parallel
Strand 5	o	480	489	parallel
Strand 6	o	526	531	parallel
Strand 7	o	556	560	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	616	623	first strand
Strand 2	o	626	632	anti-parallel
Strand 3	o	676	681	anti-parallel
Strand 4	o	666	671	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	638	640	first strand
Strand 2	o	715	717	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	654	657	first strand
Strand 2	o	692	695	anti-parallel
Strand 3	o	738	741	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	34	38	first strand
Strand 2	q	236	245	anti-parallel
Strand 3	q	78	84	anti-parallel
Strand 4	q	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	34	38	first strand
Strand 2	q	236	245	anti-parallel
Strand 3	q	101	109	anti-parallel
Strand 4	q	179	186	anti-parallel
Strand 5	q	191	196	anti-parallel
Strand 6	q	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	47	48	first strand
Strand 2	q	61	63	anti-parallel
Strand 3	q	89	90	anti-parallel
Strand 4	q	222	223	anti-parallel
Strand 5	q	117	122	anti-parallel
Strand 6	q	138	144	anti-parallel
Strand 7	q	148	156	anti-parallel
Strand 8	q	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	47	48	first strand
Strand 2	q	61	63	anti-parallel
Strand 3	q	89	90	anti-parallel
Strand 4	q	222	223	anti-parallel
Strand 5	q	117	122	anti-parallel
Strand 6	q	138	144	anti-parallel
Strand 7	q	148	156	anti-parallel
Strand 8	q	172	174	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	34	38	first strand
Strand 2	r	238	245	anti-parallel
Strand 3	r	78	82	anti-parallel
Strand 4	r	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	34	38	first strand
Strand 2	r	238	245	anti-parallel
Strand 3	r	102	108	anti-parallel
Strand 4	r	179	186	anti-parallel
Strand 5	r	190	196	anti-parallel
Strand 6	r	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	47	48	first strand
Strand 2	r	61	63	anti-parallel
Strand 3	r	89	91	anti-parallel
Strand 4	r	222	223	anti-parallel
Strand 5	r	117	122	anti-parallel
Strand 6	r	138	144	anti-parallel
Strand 7	r	148	156	anti-parallel
Strand 8	r	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	47	48	first strand
Strand 2	r	61	63	anti-parallel
Strand 3	r	89	91	anti-parallel
Strand 4	r	222	223	anti-parallel
Strand 5	r	117	122	anti-parallel
Strand 6	r	138	144	anti-parallel
Strand 7	r	148	156	anti-parallel
Strand 8	r	172	174	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	34	38	first strand
Strand 2	p	236	245	anti-parallel
Strand 3	p	78	84	anti-parallel
Strand 4	p	71	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	34	38	first strand
Strand 2	p	236	245	anti-parallel
Strand 3	p	102	108	anti-parallel
Strand 4	p	179	185	anti-parallel
Strand 5	p	191	196	anti-parallel
Strand 6	p	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	47	48	first strand
Strand 2	p	61	63	anti-parallel
Strand 3	p	89	90	anti-parallel
Strand 4	p	221	223	anti-parallel
Strand 5	p	117	123	anti-parallel
Strand 6	p	138	144	anti-parallel
Strand 7	p	148	156	anti-parallel
Strand 8	p	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	47	48	first strand
Strand 2	p	61	63	anti-parallel
Strand 3	p	89	90	anti-parallel
Strand 4	p	221	223	anti-parallel
Strand 5	p	117	123	anti-parallel
Strand 6	p	138	144	anti-parallel
Strand 7	p	148	156	anti-parallel
Strand 8	p	173	174	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VYH