Analysis of interatomic Contacts of Structural Units in PDB entry:
9VZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VZ8 entry

There are 5 chains in PDB entry 9VZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 124	PHE 310
D	PHE 34	GLY 469
E	PHE 34	PHE 472
L	ASP 1	LYS 111
H	GLN 1	LEU 119

There are 19 helices in PDB entry 9VZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	235	241	Right-handed alpha
Helix 2	AA2	C	304	308	Right-handed 310
Helix 3	AA3	D	234	240	Right-handed alpha
Helix 4	AA4	D	273	277	Right-handed 310
Helix 5	AA5	D	306	308	Right-handed 310
Helix 6	AA6	D	327	329	Right-handed 310
Helix 7	AA7	D	360	362	Right-handed 310
Helix 8	AA8	D	400	406	Right-handed alpha
Helix 9	AA9	D	462	466	Right-handed 310
Helix 10	AB1	E	210	215	Right-handed alpha
Helix 11	AB2	E	222	227	Right-handed alpha
Helix 12	AB3	E	234	240	Right-handed alpha
Helix 13	AB4	E	327	329	Right-handed 310
Helix 14	AB5	E	360	362	Right-handed 310
Helix 15	AB6	E	462	465	Right-handed 310
Helix 16	AB7	E	466	472	Right-handed alpha
Helix 17	AB8	L	83	87	Right-handed 310
Helix 18	AB9	H	28	32	Right-handed 310
Helix 19	AC1	H	87	91	Right-handed 310

There are 20 sheets in PDB entry 9VZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	253	256	anti-parallel
Strand 3	D	303	304	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	D	364	374	parallel
Strand 3	D	42	46	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	D	364	374	parallel
Strand 3	D	345	350	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	376	382	anti-parallel
Strand 3	D	101	108	anti-parallel
Strand 4	D	314	315	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	255	first strand
Strand 2	D	154	159	anti-parallel
Strand 3	D	331	337	anti-parallel
Strand 4	D	72	77	anti-parallel
Strand 5	D	453	454	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	124	first strand
Strand 2	D	146	150	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	172	first strand
Strand 2	D	189	195	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	230	231	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	263	first strand
Strand 2	D	294	299	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	268	first strand
Strand 2	E	364	366	parallel
Strand 3	E	348	350	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	38	first strand
Strand 2	E	376	380	anti-parallel
Strand 3	E	103	108	anti-parallel
Strand 4	E	314	315	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	370	372	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	249	255	first strand
Strand 2	E	154	161	anti-parallel
Strand 3	E	331	337	anti-parallel
Strand 4	E	72	77	anti-parallel
Strand 5	E	453	454	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	121	first strand
Strand 2	E	148	150	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	195	first strand
Strand 2	E	166	169	anti-parallel
Strand 3	E	230	233	anti-parallel
Strand 4	E	201	202	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	263	first strand
Strand 2	E	294	298	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	68	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	13	first strand
Strand 2	L	106	110	parallel
Strand 3	L	89	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	49	52	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	44	51	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	93	96	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VZ8