Analysis of interatomic Contacts of Structural Units in PDB entry:
9VZY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VZY entry

There are 5 chains in PDB entry 9VZY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	ARG 389
B	VAL 1	ARG 389
C	GLU 2	ARG 389
D	VAL 1	PHE 153
E	VAL 1	ARG 52

There are113 helices in PDB entry 9VZY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	16	24	Right-handed alpha
Helix 3	AA3	A	29	36	Right-handed alpha
Helix 4	AA4	A	42	53	Right-handed alpha
Helix 5	AA5	A	56	62	Right-handed 310
Helix 6	AA6	A	87	111	Right-handed alpha
Helix 7	AA7	A	128	144	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	206	223	Right-handed alpha
Helix 10	AB1	A	239	257	Right-handed alpha
Helix 11	AB2	A	258	264	Right-handed alpha
Helix 12	AB3	A	265	272	Right-handed alpha
Helix 13	AB4	A	273	278	Right-handed 310
Helix 14	AB5	A	279	290	Right-handed alpha
Helix 15	AB6	A	293	304	Right-handed alpha
Helix 16	AB7	A	337	347	Right-handed alpha
Helix 17	AB8	A	347	360	Right-handed alpha
Helix 18	AB9	A	364	373	Right-handed alpha
Helix 19	AC1	A	375	377	Right-handed 310
Helix 20	AC2	A	378	386	Right-handed alpha
Helix 21	AC3	B	3	13	Right-handed alpha
Helix 22	AC4	B	16	24	Right-handed alpha
Helix 23	AC5	B	29	36	Right-handed alpha
Helix 24	AC6	B	42	54	Right-handed alpha
Helix 25	AC7	B	57	62	Right-handed 310
Helix 26	AC8	B	87	111	Right-handed alpha
Helix 27	AC9	B	128	144	Right-handed alpha
Helix 28	AD1	B	154	169	Right-handed alpha
Helix 29	AD2	B	206	223	Right-handed alpha
Helix 30	AD3	B	239	257	Right-handed alpha
Helix 31	AD4	B	258	264	Right-handed alpha
Helix 32	AD5	B	265	270	Right-handed alpha
Helix 33	AD6	B	274	278	Right-handed 310
Helix 34	AD7	B	279	291	Right-handed alpha
Helix 35	AD8	B	293	305	Right-handed alpha
Helix 36	AD9	B	337	347	Right-handed alpha
Helix 37	AE1	B	347	360	Right-handed alpha
Helix 38	AE2	B	364	373	Right-handed alpha
Helix 39	AE3	B	375	377	Right-handed 310
Helix 40	AE4	B	378	386	Right-handed alpha
Helix 41	AE5	C	3	13	Right-handed alpha
Helix 42	AE6	C	16	24	Right-handed alpha
Helix 43	AE7	C	29	36	Right-handed alpha
Helix 44	AE8	C	42	53	Right-handed alpha
Helix 45	AE9	C	57	62	Right-handed 310
Helix 46	AF1	C	87	112	Right-handed alpha
Helix 47	AF2	C	128	144	Right-handed alpha
Helix 48	AF3	C	154	169	Right-handed alpha
Helix 49	AF4	C	206	223	Right-handed alpha
Helix 50	AF5	C	239	257	Right-handed alpha
Helix 51	AF6	C	258	265	Right-handed alpha
Helix 52	AF7	C	265	271	Right-handed alpha
Helix 53	AF8	C	274	278	Right-handed 310
Helix 54	AF9	C	279	288	Right-handed alpha
Helix 55	AG1	C	289	291	Right-handed 310
Helix 56	AG2	C	293	305	Right-handed alpha
Helix 57	AG3	C	338	347	Right-handed alpha
Helix 58	AG4	C	347	360	Right-handed alpha
Helix 59	AG5	C	364	373	Right-handed alpha
Helix 60	AG6	C	375	377	Right-handed 310
Helix 61	AG7	C	378	386	Right-handed alpha
Helix 62	AG8	D	6	16	Right-handed alpha
Helix 63	AG9	D	23	36	Right-handed alpha
Helix 64	AH1	D	43	53	Right-handed alpha
Helix 65	AH2	D	54	63	Right-handed alpha
Helix 66	AH3	D	71	85	Right-handed alpha
Helix 67	AH4	D	86	90	Right-handed 310
Helix 68	AH5	D	98	109	Right-handed alpha
Helix 69	AH6	D	127	136	Right-handed alpha
Helix 70	AH7	D	141	150	Right-handed alpha
Helix 71	AH8	E	6	15	Right-handed alpha
Helix 72	AH9	E	23	36	Right-handed alpha
Helix 73	AI1	E	43	53	Right-handed alpha
Helix 74	AI2	E	53	62	Right-handed alpha
Helix 75	AI3	E	71	85	Right-handed alpha
Helix 76	AI4	E	87	92	Right-handed alpha
Helix 77	AI5	E	98	109	Right-handed alpha
Helix 78	AI6	E	127	136	Right-handed alpha
Helix 79	AI7	E	141	150	Right-handed alpha
Helix 80	AI8	F	6	16	Right-handed alpha
Helix 81	AI9	F	23	36	Right-handed alpha
Helix 82	AJ1	F	43	53	Right-handed alpha
Helix 83	AJ2	F	53	63	Right-handed alpha
Helix 84	AJ3	F	71	85	Right-handed alpha
Helix 85	AJ4	F	87	93	Right-handed alpha
Helix 86	AJ5	F	97	109	Right-handed alpha
Helix 87	AJ6	F	127	135	Right-handed alpha
Helix 88	AJ7	F	141	150	Right-handed alpha
Helix 89	AJ8	G	6	16	Right-handed alpha
Helix 90	AJ9	G	23	36	Right-handed alpha
Helix 91	AK1	G	43	53	Right-handed alpha
Helix 92	AK2	G	53	63	Right-handed alpha
Helix 93	AK3	G	71	85	Right-handed alpha
Helix 94	AK4	G	86	89	Right-handed 310
Helix 95	AK5	G	98	109	Right-handed alpha
Helix 96	AK6	G	127	136	Right-handed alpha
Helix 97	AK7	G	141	150	Right-handed alpha
Helix 98	AK8	H	6	16	Right-handed alpha
Helix 99	AK9	H	23	36	Right-handed alpha
Helix 100	AL1	H	43	53	Right-handed alpha
Helix 101	AL2	H	53	63	Right-handed alpha
Helix 102	AL3	H	71	85	Right-handed alpha
Helix 103	AL4	H	97	109	Right-handed alpha
Helix 104	AL5	H	127	135	Right-handed alpha
Helix 105	AL6	H	141	150	Right-handed alpha
Helix 106	AL7	I	6	16	Right-handed alpha
Helix 107	AL8	I	23	36	Right-handed alpha
Helix 108	AL9	I	43	52	Right-handed alpha
Helix 109	AM1	I	53	63	Right-handed alpha
Helix 110	AM2	I	71	85	Right-handed alpha
Helix 111	AM3	I	98	109	Right-handed alpha
Helix 112	AM4	I	127	135	Right-handed alpha
Helix 113	AM5	I	141	150	Right-handed alpha

There are 9 sheets in PDB entry 9VZY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	198	201	parallel
Strand 3	A	188	191	anti-parallel
Strand 4	A	227	229	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	175	first strand
Strand 2	B	198	201	parallel
Strand 3	B	188	191	anti-parallel
Strand 4	B	227	229	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	176	first strand
Strand 2	C	198	202	parallel
Strand 3	C	188	191	anti-parallel
Strand 4	C	227	229	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	39	42	parallel
Strand 3	D	3	5	parallel
Strand 4	D	112	114	parallel
Strand 5	D	139	140	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	39	42	parallel
Strand 3	E	3	5	parallel
Strand 4	E	112	114	parallel
Strand 5	E	139	140	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	39	42	parallel
Strand 3	F	3	5	parallel
Strand 4	F	112	114	parallel
Strand 5	F	139	140	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	39	42	parallel
Strand 3	G	3	5	parallel
Strand 4	G	112	114	parallel
Strand 5	G	139	140	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	39	42	parallel
Strand 3	H	3	5	parallel
Strand 4	H	112	114	parallel
Strand 5	H	139	140	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	68	first strand
Strand 2	I	39	42	parallel
Strand 3	I	3	5	parallel
Strand 4	I	112	114	parallel
Strand 5	I	139	140	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VZY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VZY