Analysis of interatomic Contacts of Structural Units in PDB entry:
9VZZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VZZ entry

There are 4 chains in PDB entry 9VZZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0PHE 153
B
 MET 0PHE 153
C
 MET 0PHE 153
D
 MET 0PHE 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9VZZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 16Right-handed alpha
Helix 2
AA2
A
23 36Right-handed alpha
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
53 62Right-handed alpha
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
98 110Right-handed alpha
Helix 7
AA7
A
127 136Right-handed alpha
Helix 8
AA8
A
141 149Right-handed alpha
Helix 9
AA9
B
6 16Right-handed alpha
Helix 10
AB1
B
23 36Right-handed alpha
Helix 11
AB2
B
43 53Right-handed alpha
Helix 12
AB3
B
53 62Right-handed alpha
Helix 13
AB4
B
71 85Right-handed alpha
Helix 14
AB5
B
86 89Right-handed 310
Helix 15
AB6
B
98 110Right-handed alpha
Helix 16
AB7
B
127 136Right-handed alpha
Helix 17
AB8
B
141 149Right-handed alpha
Helix 18
AB9
C
6 16Right-handed alpha
Helix 19
AC1
C
23 36Right-handed alpha
Helix 20
AC2
C
43 53Right-handed alpha
Helix 21
AC3
C
53 62Right-handed alpha
Helix 22
AC4
C
71 85Right-handed alpha
Helix 23
AC5
C
98 110Right-handed alpha
Helix 24
AC6
C
129 136Right-handed alpha
Helix 25
AC7
C
141 149Right-handed alpha
Helix 26
AC8
D
6 16Right-handed alpha
Helix 27
AC9
D
23 37Right-handed alpha
Helix 28
AD1
D
42 53Right-handed alpha
Helix 29
AD2
D
53 62Right-handed alpha
Helix 30
AD3
D
103 109Right-handed alpha
Helix 31
AD4
D
129 136Right-handed alpha
Helix 32
AD5
D
141 149Right-handed alpha
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There are 4 sheets in PDB entry 9VZZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
39 42parallel
Strand 3
A
3 5parallel
Strand 4
A
112 114parallel
Strand 5
A
139 140parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
39 42parallel
Strand 3
B
3 5parallel
Strand 4
B
112 114parallel
Strand 5
B
139 140parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
39 42parallel
Strand 3
C
3 5parallel
Strand 4
C
112 114parallel
Strand 5
C
139 140parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
D
3 5parallel
Strand 3
D
112 114parallel
Strand 4
D
139 140parallel
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