Analysis of interatomic Contacts of Structural Units in PDB entry:
9W01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W01 entry

There are 2 chains in PDB entry 9W01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1067	VAL 1175
B	MET 1	VAL 809

There are 34 helices in PDB entry 9W01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1097	1102	Right-handed alpha
Helix 2	AA2	A	1150	1154	Right-handed 310
Helix 3	AA3	B	10	25	Right-handed alpha
Helix 4	AA4	B	26	33	Right-handed alpha
Helix 5	AA5	B	55	75	Right-handed alpha
Helix 6	AA6	B	89	101	Right-handed alpha
Helix 7	AA7	B	104	112	Right-handed alpha
Helix 8	AA8	B	117	138	Right-handed alpha
Helix 9	AA9	B	152	168	Right-handed alpha
Helix 10	AB1	B	226	233	Right-handed 310
Helix 11	AB2	B	259	266	Right-handed 310
Helix 12	AB3	B	269	273	Right-handed 310
Helix 13	AB4	B	296	303	Right-handed 310
Helix 14	AB5	B	329	339	Right-handed alpha
Helix 15	AB6	B	373	384	Right-handed alpha
Helix 16	AB7	B	422	431	Right-handed alpha
Helix 17	AB8	B	440	445	Right-handed alpha
Helix 18	AB9	B	447	451	Right-handed 310
Helix 19	AC1	B	484	492	Right-handed alpha
Helix 20	AC2	B	525	530	Right-handed alpha
Helix 21	AC3	B	532	537	Right-handed alpha
Helix 22	AC4	B	547	551	Right-handed 310
Helix 23	AC5	B	561	565	Right-handed 310
Helix 24	AC6	B	566	578	Right-handed alpha
Helix 25	AC7	B	610	619	Right-handed alpha
Helix 26	AC8	B	621	627	Right-handed alpha
Helix 27	AC9	B	641	650	Right-handed alpha
Helix 28	AD1	B	652	674	Right-handed alpha
Helix 29	AD2	B	691	713	Right-handed alpha
Helix 30	AD3	B	715	733	Right-handed alpha
Helix 31	AD4	B	738	743	Right-handed alpha
Helix 32	AD5	B	748	769	Right-handed alpha
Helix 33	AD6	B	773	785	Right-handed alpha
Helix 34	AD7	B	800	804	Right-handed 310

There are 10 sheets in PDB entry 9W01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1083	1086	first strand
Strand 2	A	1068	1072	anti-parallel
Strand 3	A	1170	1174	parallel
Strand 4	A	1114	1118	anti-parallel
Strand 5	A	1138	1140	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1146	1148	first strand
Strand 2	A	1157	1160	anti-parallel
Strand 3	A	1163	1166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	78	79	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	172	182	anti-parallel
Strand 3	B	408	417	anti-parallel
Strand 4	B	455	456	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	279	first strand
Strand 2	B	244	248	anti-parallel
Strand 3	B	255	258	anti-parallel
Strand 4	B	218	224	parallel
Strand 5	B	198	211	anti-parallel
Strand 6	B	387	398	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	235	238	parallel
Strand 3	B	321	324	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	436	first strand
Strand 2	B	586	589	parallel
Strand 3	B	557	559	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	523	524	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	469	471	anti-parallel
Strand 3	B	518	519	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	594	first strand
Strand 2	B	638	639	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W01

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W01