Analysis of interatomic Contacts of Structural Units in PDB entry:
9W04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W04 entry

There are 7 chains in PDB entry 9W04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 309
B
 MET 1TRP 309
C
 A 1 A 37
D
 T 4 T 22
E
 C 23 A 34
F
 T 5 A 22
G
 C 23 A 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9W04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
50 59Right-handed alpha
Helix 4
AA4
A
65 97Right-handed alpha
Helix 5
AA5
A
103 134Right-handed alpha
Helix 6
AA6
A
137 146Right-handed alpha
Helix 7
AA7
A
150 161Right-handed alpha
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
168 177Right-handed alpha
Helix 10
AB1
A
181 185Right-handed 310
Helix 11
AB2
A
195 210Right-handed alpha
Helix 12
AB3
A
217 229Right-handed alpha
Helix 13
AB4
A
250 252Right-handed 310
Helix 14
AB5
A
253 282Right-handed alpha
Helix 15
AB6
A
301 306Right-handed 310
Helix 16
AB7
B
2 10Right-handed alpha
Helix 17
AB8
B
23 27Right-handed 310
Helix 18
AB9
B
50 59Right-handed alpha
Helix 19
AC1
B
65 97Right-handed alpha
Helix 20
AC2
B
103 134Right-handed alpha
Helix 21
AC3
B
137 146Right-handed alpha
Helix 22
AC4
B
150 161Right-handed alpha
Helix 23
AC5
B
168 177Right-handed alpha
Helix 24
AC6
B
181 185Right-handed 310
Helix 25
AC7
B
195 212Right-handed alpha
Helix 26
AC8
B
217 230Right-handed alpha
Helix 27
AC9
B
250 252Right-handed 310
Helix 28
AD1
B
253 281Right-handed alpha
Helix 29
AD2
B
288 293Right-handed alpha
Helix 30
AD3
B
301 305Right-handed 310
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There are 4 sheets in PDB entry 9W04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
46 49anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
244 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
46 49anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
244 248anti-parallel
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