Analysis of interatomic Contacts of Structural Units in PDB entry:
9W05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W05 entry

There are 2 chains in PDB entry 9W05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -2MET 248
B
 PRO 2MET 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9W05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
20 32Right-handed alpha
Helix 3
AA3
A
33 35Right-handed 310
Helix 4
AA4
A
49 51Right-handed 310
Helix 5
AA5
A
52 64Right-handed alpha
Helix 6
AA6
A
71 75Right-handed 310
Helix 7
AA7
A
78 88Right-handed alpha
Helix 8
AA8
A
127 142Right-handed alpha
Helix 9
AA9
A
155 166Right-handed alpha
Helix 10
AB1
A
168 175Right-handed alpha
Helix 11
AB2
A
177 202Right-handed alpha
Helix 12
AB3
A
203 205Right-handed 310
Helix 13
AB4
B
3 14Right-handed alpha
Helix 14
AB5
B
20 32Right-handed alpha
Helix 15
AB6
B
33 35Right-handed 310
Helix 16
AB7
B
49 51Right-handed 310
Helix 17
AB8
B
52 64Right-handed alpha
Helix 18
AB9
B
71 75Right-handed 310
Helix 19
AC1
B
78 88Right-handed alpha
Helix 20
AC2
B
127 142Right-handed alpha
Helix 21
AC3
B
155 166Right-handed alpha
Helix 22
AC4
B
168 174Right-handed alpha
Helix 23
AC5
B
177 202Right-handed alpha
Helix 24
AC6
B
203 205Right-handed 310
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There are 4 sheets in PDB entry 9W05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
228 237anti-parallel
Strand 3
A
211 220anti-parallel
Strand 4
A
103 105parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
41 45parallel
Strand 3
A
96 100parallel
Strand 4
A
211 220parallel
Strand 5
A
228 237anti-parallel
Strand 6
A
243 246anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
228 237anti-parallel
Strand 3
B
211 220anti-parallel
Strand 4
B
103 105parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
41 45parallel
Strand 3
B
96 100parallel
Strand 4
B
211 220parallel
Strand 5
B
228 237anti-parallel
Strand 6
B
243 246anti-parallel
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