Analysis of interatomic Contacts of Structural Units in PDB entry:
9W0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W0M entry

There are 4 chains in PDB entry 9W0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	ASP 294
C	ILE 9	ARG 62
B	ASP 5	ASN 340
D	LEU 5	PHE 354

There are 28 helices in PDB entry 9W0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	30	56	Right-handed alpha
Helix 3	AA3	A	57	59	Right-handed 310
Helix 4	AA4	A	70	94	Right-handed alpha
Helix 5	AA5	A	101	136	Right-handed alpha
Helix 6	AA6	A	144	170	Right-handed alpha
Helix 7	AA7	A	187	216	Right-handed alpha
Helix 8	AA8	A	221	225	Right-handed 310
Helix 9	AA9	A	226	259	Right-handed alpha
Helix 10	AB1	A	269	274	Right-handed alpha
Helix 11	AB2	A	275	277	Right-handed 310
Helix 12	AB3	A	278	294	Right-handed alpha
Helix 13	AB4	C	10	21	Right-handed alpha
Helix 14	AB5	C	29	34	Right-handed alpha
Helix 15	AB6	C	34	46	Right-handed alpha
Helix 16	AB7	B	6	10	Right-handed alpha
Helix 17	AB8	B	10	27	Right-handed alpha
Helix 18	AB9	B	28	33	Right-handed 310
Helix 19	AC1	D	6	32	Right-handed alpha
Helix 20	AC2	D	43	47	Right-handed 310
Helix 21	AC3	D	49	53	Right-handed 310
Helix 22	AC4	D	207	216	Right-handed 310
Helix 23	AC5	D	242	256	Right-handed alpha
Helix 24	AC6	D	271	273	Right-handed 310
Helix 25	AC7	D	274	279	Right-handed alpha
Helix 26	AC8	D	282	286	Right-handed 310
Helix 27	AC9	D	295	309	Right-handed alpha
Helix 28	AD1	D	327	352	Right-handed alpha

There are 8 sheets in PDB entry 9W0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	137	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	293	295	anti-parallel
Strand 4	B	307	309	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	336	339	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	191	first strand
Strand 2	D	194	200	anti-parallel
Strand 3	D	33	37	parallel
Strand 4	D	220	226	parallel
Strand 5	D	263	269	parallel
Strand 6	D	319	323	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W0M