Analysis of interatomic Contacts of Structural Units in PDB entry:
9W1K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W1K entry

There are 4 chains in PDB entry 9W1K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 23	ASP 417
B	GLN 21	HIS 418
C	GLN 23	HIS 418
D	GLN 23	HIS 418

There are 36 helices in PDB entry 9W1K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	101	106	Right-handed alpha
Helix 4	AA4	A	224	227	Right-handed 310
Helix 5	AA5	A	229	232	Right-handed 310
Helix 6	AA6	A	280	284	Right-handed alpha
Helix 7	AA7	A	285	290	Right-handed alpha
Helix 8	AA8	A	342	344	Right-handed 310
Helix 9	AA9	A	376	383	Right-handed alpha
Helix 10	AB1	A	399	403	Right-handed alpha
Helix 11	AB2	B	38	44	Right-handed alpha
Helix 12	AB3	B	101	105	Right-handed 310
Helix 13	AB4	B	224	227	Right-handed 310
Helix 14	AB5	B	280	284	Right-handed alpha
Helix 15	AB6	B	285	290	Right-handed alpha
Helix 16	AB7	B	342	344	Right-handed 310
Helix 17	AB8	B	376	383	Right-handed alpha
Helix 18	AB9	B	399	404	Right-handed alpha
Helix 19	AC1	C	38	43	Right-handed alpha
Helix 20	AC2	C	49	53	Right-handed 310
Helix 21	AC3	C	101	106	Right-handed alpha
Helix 22	AC4	C	223	227	Right-handed 310
Helix 23	AC5	C	280	284	Right-handed alpha
Helix 24	AC6	C	285	290	Right-handed alpha
Helix 25	AC7	C	342	344	Right-handed 310
Helix 26	AC8	C	376	383	Right-handed alpha
Helix 27	AC9	C	399	403	Right-handed alpha
Helix 28	AD1	D	38	44	Right-handed alpha
Helix 29	AD2	D	49	53	Right-handed 310
Helix 30	AD3	D	101	106	Right-handed alpha
Helix 31	AD4	D	224	227	Right-handed 310
Helix 32	AD5	D	280	284	Right-handed alpha
Helix 33	AD6	D	287	291	Right-handed 310
Helix 34	AD7	D	342	344	Right-handed 310
Helix 35	AD8	D	376	383	Right-handed alpha
Helix 36	AD9	D	399	403	Right-handed alpha

There are 32 sheets in PDB entry 9W1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	24	30	parallel
Strand 3	A	392	398	anti-parallel
Strand 4	A	369	374	anti-parallel
Strand 5	A	359	364	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	61	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	80	84	anti-parallel
Strand 4	A	97	98	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	153	158	anti-parallel
Strand 4	A	163	169	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	146	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	188	first strand
Strand 2	A	196	202	anti-parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	217	222	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	240	243	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	264	269	anti-parallel
Strand 3	A	274	279	anti-parallel
Strand 4	A	299	303	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	316	first strand
Strand 2	A	321	326	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	346	351	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	25	30	parallel
Strand 3	B	392	398	anti-parallel
Strand 4	B	369	374	anti-parallel
Strand 5	B	359	364	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	95	98	parallel
Strand 3	B	80	84	anti-parallel
Strand 4	B	64	68	anti-parallel
Strand 5	B	57	61	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	153	158	anti-parallel
Strand 4	B	163	169	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	146	148	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	188	first strand
Strand 2	B	196	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	237	first strand
Strand 2	B	240	243	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	264	269	anti-parallel
Strand 3	B	274	279	anti-parallel
Strand 4	B	298	303	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	316	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	346	351	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	24	30	parallel
Strand 3	C	392	398	anti-parallel
Strand 4	C	369	374	anti-parallel
Strand 5	C	359	364	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	61	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	81	84	anti-parallel
Strand 4	C	97	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	126	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	153	158	anti-parallel
Strand 4	C	163	169	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	142	first strand
Strand 2	C	145	148	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	188	first strand
Strand 2	C	196	202	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	217	221	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	237	first strand
Strand 2	C	240	243	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	253	first strand
Strand 2	C	264	269	anti-parallel
Strand 3	C	274	279	anti-parallel
Strand 4	C	299	303	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	321	326	anti-parallel
Strand 3	C	331	336	anti-parallel
Strand 4	C	346	351	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	25	30	parallel
Strand 3	D	392	398	anti-parallel
Strand 4	D	369	374	anti-parallel
Strand 5	D	359	364	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	61	first strand
Strand 2	D	64	68	anti-parallel
Strand 3	D	80	84	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	153	158	anti-parallel
Strand 4	D	163	169	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	146	148	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	188	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	217	222	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	237	first strand
Strand 2	D	240	243	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	253	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	274	279	anti-parallel
Strand 4	D	299	303	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	310	316	first strand
Strand 2	D	321	326	anti-parallel
Strand 3	D	331	336	anti-parallel
Strand 4	D	346	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W1K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W1K