Analysis of interatomic Contacts of Structural Units in PDB entry:
9W2G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W2G entry

There are 6 chains in PDB entry 9W2G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ARG 13	LEU 50
A	GLY 25	VAL 394
N	GLN 1	VAL 126
R	THR 24	ALA 321
B	LEU 14	ASN 340
C	ASP 1	GLY 5

There are 28 helices in PDB entry 9W2G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	13	23	Right-handed alpha
Helix 2	AA2	G	29	44	Right-handed alpha
Helix 3	AA3	A	26	40	Right-handed alpha
Helix 4	AA4	A	52	56	Right-handed 310
Helix 5	AA5	A	233	239	Right-handed 310
Helix 6	AA6	A	265	278	Right-handed alpha
Helix 7	AA7	A	293	303	Right-handed alpha
Helix 8	AA8	A	312	317	Right-handed alpha
Helix 9	AA9	A	332	350	Right-handed alpha
Helix 10	AB1	A	370	391	Right-handed alpha
Helix 11	AB2	N	28	32	Right-handed 310
Helix 12	AB3	N	62	65	Right-handed 310
Helix 13	AB4	N	87	91	Right-handed 310
Helix 14	AB5	R	29	61	Right-handed alpha
Helix 15	AB6	R	69	95	Right-handed alpha
Helix 16	AB7	R	105	110	Right-handed alpha
Helix 17	AB8	R	111	133	Right-handed alpha
Helix 18	AB9	R	144	164	Right-handed alpha
Helix 19	AC1	R	165	167	Right-handed 310
Helix 20	AC2	R	191	206	Right-handed alpha
Helix 21	AC3	R	206	227	Right-handed alpha
Helix 22	AC4	R	241	263	Right-handed alpha
Helix 23	AC5	R	263	272	Right-handed alpha
Helix 24	AC6	R	283	298	Right-handed alpha
Helix 25	AC7	R	298	312	Right-handed alpha
Helix 26	AC8	R	313	321	Right-handed alpha
Helix 27	AC9	B	15	25	Right-handed alpha
Helix 28	AD1	B	29	34	Right-handed alpha

There are 10 sheets in PDB entry 9W2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	287	292	parallel
Strand 6	A	359	362	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	82	anti-parallel
Strand 4	N	72	73	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W2G

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W2G