Analysis of interatomic Contacts of Structural Units in PDB entry:
9W2P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W2P entry

There are 3 chains in PDB entry 9W2P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL -5	GLN 424
A	VAL -5	GLN 424
C	GLY -1	GLN 424

There are 44 helices in PDB entry 9W2P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	44	Right-handed alpha
Helix 2	AA2	B	67	75	Right-handed alpha
Helix 3	AA3	B	91	94	Right-handed 310
Helix 4	AA4	B	95	106	Right-handed alpha
Helix 5	AA5	B	108	110	Right-handed 310
Helix 6	AA6	B	118	128	Right-handed alpha
Helix 7	AA7	B	150	162	Right-handed alpha
Helix 8	AA8	B	210	225	Right-handed alpha
Helix 9	AA9	B	246	263	Right-handed alpha
Helix 10	AB1	B	280	284	Right-handed 310
Helix 11	AB2	B	293	298	Right-handed alpha
Helix 12	AB3	B	337	350	Right-handed alpha
Helix 13	AB4	B	385	387	Right-handed 310
Helix 14	AB5	B	397	401	Right-handed 310
Helix 15	AB6	B	409	419	Right-handed alpha
Helix 16	AB7	A	23	44	Right-handed alpha
Helix 17	AB8	A	67	75	Right-handed alpha
Helix 18	AB9	A	91	94	Right-handed 310
Helix 19	AC1	A	95	106	Right-handed alpha
Helix 20	AC2	A	108	110	Right-handed 310
Helix 21	AC3	A	118	128	Right-handed alpha
Helix 22	AC4	A	150	162	Right-handed alpha
Helix 23	AC5	A	210	225	Right-handed alpha
Helix 24	AC6	A	246	263	Right-handed alpha
Helix 25	AC7	A	293	298	Right-handed alpha
Helix 26	AC8	A	337	350	Right-handed alpha
Helix 27	AC9	A	385	387	Right-handed 310
Helix 28	AD1	A	396	401	Right-handed alpha
Helix 29	AD2	A	409	419	Right-handed alpha
Helix 30	AD3	C	23	43	Right-handed alpha
Helix 31	AD4	C	67	75	Right-handed alpha
Helix 32	AD5	C	84	86	Right-handed 310
Helix 33	AD6	C	91	94	Right-handed 310
Helix 34	AD7	C	95	106	Right-handed alpha
Helix 35	AD8	C	108	110	Right-handed 310
Helix 36	AD9	C	118	128	Right-handed alpha
Helix 37	AE1	C	150	162	Right-handed alpha
Helix 38	AE2	C	210	225	Right-handed alpha
Helix 39	AE3	C	246	263	Right-handed alpha
Helix 40	AE4	C	293	298	Right-handed alpha
Helix 41	AE5	C	337	350	Right-handed alpha
Helix 42	AE6	C	385	387	Right-handed 310
Helix 43	AE7	C	397	401	Right-handed 310
Helix 44	AE8	C	409	419	Right-handed alpha

There are 17 sheets in PDB entry 9W2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-3	-2	first strand
Strand 2	A	57	60	parallel
Strand 3	A	63	66	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	47	52	parallel
Strand 3	B	5	8	parallel
Strand 4	B	112	116	parallel
Strand 5	B	131	135	parallel
Strand 6	B	147	148	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	63	66	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	178	186	anti-parallel
Strand 3	B	353	362	parallel
Strand 4	B	326	334	parallel
Strand 5	B	231	236	parallel
Strand 6	B	266	268	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	300	302	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	314	315	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	389	395	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	47	52	parallel
Strand 3	A	5	8	parallel
Strand 4	A	112	116	parallel
Strand 5	A	131	135	parallel
Strand 6	A	147	148	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	178	186	anti-parallel
Strand 3	A	353	362	parallel
Strand 4	A	326	331	parallel
Strand 5	A	231	236	parallel
Strand 6	A	266	268	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	300	302	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	389	395	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	47	52	parallel
Strand 3	C	5	8	parallel
Strand 4	C	112	116	parallel
Strand 5	C	131	135	parallel
Strand 6	C	147	148	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	65	66	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	174	first strand
Strand 2	C	178	186	anti-parallel
Strand 3	C	353	362	parallel
Strand 4	C	326	334	parallel
Strand 5	C	231	236	parallel
Strand 6	C	266	267	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	203	206	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	300	302	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	372	first strand
Strand 2	C	389	395	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W2P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W2P