Analysis of interatomic Contacts of Structural Units in PDB entry:
9W2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W2T entry

There are 25 chains in PDB entry 9W2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
8
 MET 1LEU 39
K
 ASP 1LEU 42
K
 GLN 44ALA 74
L
 ASP 1LEU 42
L
 GLN 44ALA 74
M
 ASP 1LEU 42
M
 GLN 44MET 75
N
 ASP 1LEU 42
N
 GLN 44MET 75
O
 ASP 1LEU 42
O
 GLN 44MET 75
P
 ASP 1LEU 42
P
 GLN 44ALA 74
Q
 ASP 1LEU 42
Q
 GLN 44ALA 74
R
 ASP 1LEU 42
R
 GLN 44ALA 74
a
 GLU 3THR 226
b
 PRO 1ILE 101
d
 LEU 118THR 159
e
 PRO 2LYS 70
f
 PRO 5HIS 87
g
 THR 20ILE 98
j
 LEU 2LYS 49
k
 GLY 13ARG 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 9W2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
8
8 22Right-handed alpha
Helix 2
AA2
8
22 30Right-handed alpha
Helix 3
AA3
K
2 15Right-handed alpha
Helix 4
AA4
K
18 39Right-handed alpha
Helix 5
AA5
K
43 74Right-handed alpha
Helix 6
AA6
L
2 15Right-handed alpha
Helix 7
AA7
L
17 39Right-handed alpha
Helix 8
AA8
L
44 71Right-handed alpha
Helix 9
AA9
M
2 15Right-handed alpha
Helix 10
AB1
M
18 39Right-handed alpha
Helix 11
AB2
M
42 73Right-handed alpha
Helix 12
AB3
N
2 16Right-handed alpha
Helix 13
AB4
N
18 39Right-handed alpha
Helix 14
AB5
N
42 74Right-handed alpha
Helix 15
AB6
O
2 15Right-handed alpha
Helix 16
AB7
O
18 36Right-handed alpha
Helix 17
AB8
O
37 38Right-handed 310
Helix 18
AB9
O
39 41Right-handed 310
Helix 19
AC1
O
42 74Right-handed alpha
Helix 20
AC2
P
2 15Right-handed alpha
Helix 21
AC3
P
17 39Right-handed alpha
Helix 22
AC4
P
42 73Right-handed alpha
Helix 23
AC5
Q
2 15Right-handed alpha
Helix 24
AC6
Q
18 39Right-handed alpha
Helix 25
AC7
Q
42 58Right-handed alpha
Helix 26
AC8
Q
58 73Right-handed alpha
Helix 27
AC9
R
2 16Right-handed alpha
Helix 28
AD1
R
18 36Right-handed alpha
Helix 29
AD2
R
43 73Right-handed alpha
Helix 30
AD3
a
6 10Right-handed 310
Helix 31
AD4
a
19 25Right-handed alpha
Helix 32
AD5
a
26 31Right-handed 310
Helix 33
AD6
a
40 58Right-handed alpha
Helix 34
AD7
a
64 67Right-handed 310
Helix 35
AD8
a
68 86Right-handed alpha
Helix 36
AD9
a
93 96Right-handed 310
Helix 37
AE1
a
97 127Right-handed alpha
Helix 38
AE2
a
134 137Right-handed 310
Helix 39
AE3
a
138 182Right-handed alpha
Helix 40
AE4
a
185 225Right-handed alpha
Helix 41
AE5
b
19 30Right-handed alpha
Helix 42
AE6
b
32 48Right-handed alpha
Helix 43
AE7
b
54 101Right-handed alpha
Helix 44
AE8
d
119 123Right-handed alpha
Helix 45
AE9
d
126 130Right-handed 310
Helix 46
AF1
d
131 139Right-handed alpha
Helix 47
AF2
d
140 143Right-handed 310
Helix 48
AF3
e
7 70Right-handed alpha
Helix 49
AF4
f
18 26Right-handed alpha
Helix 50
AF5
f
29 49Right-handed alpha
Helix 51
AF6
f
55 58Right-handed 310
Helix 52
AF7
f
59 74Right-handed alpha
Helix 53
AF8
f
76 82Right-handed 310
Helix 54
AF9
g
22 37Right-handed alpha
Helix 55
AG1
g
43 61Right-handed alpha
Helix 56
AG2
g
62 66Right-handed 310
Helix 57
AG3
g
68 85Right-handed alpha
Helix 58
AG4
g
85 94Right-handed alpha
Helix 59
AG5
j
3 10Right-handed alpha
Helix 60
AG6
j
13 19Right-handed alpha
Helix 61
AG7
j
21 47Right-handed alpha
Helix 62
AG8
k
22 41Right-handed alpha
Helix 63
AG9
k
41 46Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9W2T.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
12 13first strand
Strand 2
b
17 18anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il