Analysis of interatomic Contacts of Structural Units in PDB entry:
9W30


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W30 entry

There are 4 chains in PDB entry 9W30 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 257
B
 MET 1VAL 257
C
 MET 1VAL 257
D
 MET 1LEU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9W30. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 45Right-handed 310
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
81 97Right-handed alpha
Helix 5
AA5
A
113 126Right-handed alpha
Helix 6
AA6
A
127 130Right-handed 310
Helix 7
AA7
A
141 148Right-handed alpha
Helix 8
AA8
A
155 163Right-handed alpha
Helix 9
AA9
A
174 183Right-handed alpha
Helix 10
AB1
A
184 191Right-handed alpha
Helix 11
AB2
A
208 220Right-handed alpha
Helix 12
AB3
A
237 253Right-handed alpha
Helix 13
AB4
B
43 45Right-handed 310
Helix 14
AB5
B
46 58Right-handed alpha
Helix 15
AB6
B
76 80Right-handed 310
Helix 16
AB7
B
81 97Right-handed alpha
Helix 17
AB8
B
113 126Right-handed alpha
Helix 18
AB9
B
127 130Right-handed 310
Helix 19
AC1
B
141 147Right-handed alpha
Helix 20
AC2
B
155 163Right-handed alpha
Helix 21
AC3
B
174 181Right-handed alpha
Helix 22
AC4
B
184 191Right-handed alpha
Helix 23
AC5
B
208 220Right-handed alpha
Helix 24
AC6
B
237 257Right-handed alpha
Helix 25
AC7
C
43 45Right-handed 310
Helix 26
AC8
C
46 58Right-handed alpha
Helix 27
AC9
C
76 80Right-handed 310
Helix 28
AD1
C
81 97Right-handed alpha
Helix 29
AD2
C
113 126Right-handed alpha
Helix 30
AD3
C
127 130Right-handed 310
Helix 31
AD4
C
141 148Right-handed alpha
Helix 32
AD5
C
155 163Right-handed alpha
Helix 33
AD6
C
174 181Right-handed alpha
Helix 34
AD7
C
184 191Right-handed alpha
Helix 35
AD8
C
208 220Right-handed alpha
Helix 36
AD9
C
237 257Right-handed alpha
Helix 37
AE1
D
43 45Right-handed 310
Helix 38
AE2
D
46 57Right-handed alpha
Helix 39
AE3
D
76 80Right-handed 310
Helix 40
AE4
D
81 97Right-handed alpha
Helix 41
AE5
D
113 126Right-handed alpha
Helix 42
AE6
D
127 130Right-handed 310
Helix 43
AE7
D
141 148Right-handed alpha
Helix 44
AE8
D
152 154Right-handed 310
Helix 45
AE9
D
155 163Right-handed alpha
Helix 46
AF1
D
174 182Right-handed alpha
Helix 47
AF2
D
184 191Right-handed alpha
Helix 48
AF3
D
208 220Right-handed alpha
Helix 49
AF4
D
237 253Right-handed alpha
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There are 8 sheets in PDB entry 9W30. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
28 34parallel
Strand 5
A
102 112parallel
Strand 6
A
133 136parallel
Strand 7
A
196 201parallel
Strand 8
A
223 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
170 173anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
28 34parallel
Strand 5
B
102 112parallel
Strand 6
B
133 136parallel
Strand 7
B
196 201parallel
Strand 8
B
223 228parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
170 173anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 9first strand
Strand 2
C
12 19anti-parallel
Strand 3
C
61 65anti-parallel
Strand 4
C
28 34parallel
Strand 5
C
102 112parallel
Strand 6
C
133 136parallel
Strand 7
C
196 201parallel
Strand 8
C
223 228parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 167first strand
Strand 2
C
170 173anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 9first strand
Strand 2
D
12 19anti-parallel
Strand 3
D
61 65anti-parallel
Strand 4
D
28 34parallel
Strand 5
D
102 112parallel
Strand 6
D
133 136parallel
Strand 7
D
196 201parallel
Strand 8
D
223 228parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 167first strand
Strand 2
D
170 173anti-parallel
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