Analysis of interatomic Contacts of Structural Units in PDB entry:
9W35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W35 entry

There are 4 chains in PDB entry 9W35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 5	ASN 226
A	MET 1	TYR 410
B	MET 1	TYR 410
D	VAL 4	ASN 226

There are 54 helices in PDB entry 9W35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	47	56	Right-handed alpha
Helix 2	AA2	C	77	88	Right-handed alpha
Helix 3	AA3	C	103	114	Right-handed alpha
Helix 4	AA4	C	119	134	Right-handed alpha
Helix 5	AA5	C	136	140	Right-handed 310
Helix 6	AA6	C	143	147	Right-handed 310
Helix 7	AA7	C	148	163	Right-handed alpha
Helix 8	AA8	C	172	176	Right-handed 310
Helix 9	AA9	C	178	197	Right-handed alpha
Helix 10	AB1	C	206	213	Right-handed alpha
Helix 11	AB2	A	4	15	Right-handed alpha
Helix 12	AB3	A	20	62	Right-handed alpha
Helix 13	AB4	A	76	87	Right-handed alpha
Helix 14	AB5	A	105	108	Right-handed 310
Helix 15	AB6	A	118	125	Right-handed alpha
Helix 16	AB7	A	136	140	Right-handed 310
Helix 17	AB8	A	152	157	Right-handed alpha
Helix 18	AB9	A	197	200	Right-handed 310
Helix 19	AC1	A	206	215	Right-handed alpha
Helix 20	AC2	A	229	231	Right-handed 310
Helix 21	AC3	A	232	243	Right-handed alpha
Helix 22	AC4	A	253	297	Right-handed alpha
Helix 23	AC5	A	297	308	Right-handed alpha
Helix 24	AC6	A	310	342	Right-handed alpha
Helix 25	AC7	A	343	356	Right-handed alpha
Helix 26	AC8	A	373	401	Right-handed alpha
Helix 27	AC9	A	403	408	Right-handed alpha
Helix 28	AD1	B	4	15	Right-handed alpha
Helix 29	AD2	B	20	63	Right-handed alpha
Helix 30	AD3	B	76	87	Right-handed alpha
Helix 31	AD4	B	118	126	Right-handed alpha
Helix 32	AD5	B	127	132	Right-handed alpha
Helix 33	AD6	B	136	140	Right-handed 310
Helix 34	AD7	B	150	158	Right-handed alpha
Helix 35	AD8	B	196	201	Right-handed 310
Helix 36	AD9	B	206	214	Right-handed alpha
Helix 37	AE1	B	229	231	Right-handed 310
Helix 38	AE2	B	232	243	Right-handed alpha
Helix 39	AE3	B	253	258	Right-handed alpha
Helix 40	AE4	B	261	297	Right-handed alpha
Helix 41	AE5	B	297	308	Right-handed alpha
Helix 42	AE6	B	310	342	Right-handed alpha
Helix 43	AE7	B	343	355	Right-handed alpha
Helix 44	AE8	B	373	401	Right-handed alpha
Helix 45	AE9	B	403	408	Right-handed alpha
Helix 46	AF1	D	47	56	Right-handed alpha
Helix 47	AF2	D	77	89	Right-handed alpha
Helix 48	AF3	D	103	114	Right-handed alpha
Helix 49	AF4	D	119	134	Right-handed alpha
Helix 50	AF5	D	135	139	Right-handed 310
Helix 51	AF6	D	143	147	Right-handed 310
Helix 52	AF7	D	148	163	Right-handed alpha
Helix 53	AF8	D	178	197	Right-handed alpha
Helix 54	AF9	D	206	212	Right-handed alpha

There are 14 sheets in PDB entry 9W35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	66	68	anti-parallel
Strand 3	C	71	72	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	23	25	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	39	41	parallel
Strand 3	C	217	218	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	92	first strand
Strand 2	C	167	170	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	113	116	parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	222	225	anti-parallel
Strand 5	A	66	67	anti-parallel
Strand 6	A	251	252	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	167	168	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	66	67	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	203	204	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	184	187	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	6	8	anti-parallel
Strand 3	D	66	68	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	23	26	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	202	204	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	168	170	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	224	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W35

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W35