Analysis of interatomic Contacts of Structural Units in PDB entry:
9W36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W36 entry

There are 4 chains in PDB entry 9W36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 4	VAL 225
A	PHE 2	LEU 408
B	PHE 2	LEU 408
D	VAL 4	VAL 225

There are 52 helices in PDB entry 9W36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	47	57	Right-handed alpha
Helix 2	AA2	C	72	76	Right-handed 310
Helix 3	AA3	C	77	89	Right-handed alpha
Helix 4	AA4	C	103	114	Right-handed alpha
Helix 5	AA5	C	119	134	Right-handed alpha
Helix 6	AA6	C	148	162	Right-handed alpha
Helix 7	AA7	C	178	197	Right-handed alpha
Helix 8	AA8	C	206	213	Right-handed alpha
Helix 9	AA9	A	4	16	Right-handed alpha
Helix 10	AB1	A	26	57	Right-handed alpha
Helix 11	AB2	A	76	86	Right-handed alpha
Helix 12	AB3	A	118	123	Right-handed alpha
Helix 13	AB4	A	127	130	Right-handed 310
Helix 14	AB5	A	137	140	Right-handed 310
Helix 15	AB6	A	151	158	Right-handed alpha
Helix 16	AB7	A	206	214	Right-handed alpha
Helix 17	AB8	A	232	244	Right-handed alpha
Helix 18	AB9	A	253	258	Right-handed alpha
Helix 19	AC1	A	259	289	Right-handed alpha
Helix 20	AC2	A	289	297	Right-handed alpha
Helix 21	AC3	A	298	308	Right-handed alpha
Helix 22	AC4	A	310	351	Right-handed alpha
Helix 23	AC5	A	373	401	Right-handed alpha
Helix 24	AC6	A	403	408	Right-handed alpha
Helix 25	AC7	B	4	16	Right-handed alpha
Helix 26	AC8	B	26	57	Right-handed alpha
Helix 27	AC9	B	57	62	Right-handed alpha
Helix 28	AD1	B	76	86	Right-handed alpha
Helix 29	AD2	B	118	123	Right-handed alpha
Helix 30	AD3	B	127	130	Right-handed 310
Helix 31	AD4	B	136	140	Right-handed 310
Helix 32	AD5	B	152	157	Right-handed alpha
Helix 33	AD6	B	207	214	Right-handed alpha
Helix 34	AD7	B	229	231	Right-handed 310
Helix 35	AD8	B	232	244	Right-handed alpha
Helix 36	AD9	B	253	258	Right-handed alpha
Helix 37	AE1	B	259	288	Right-handed alpha
Helix 38	AE2	B	288	297	Right-handed alpha
Helix 39	AE3	B	297	308	Right-handed alpha
Helix 40	AE4	B	310	351	Right-handed alpha
Helix 41	AE5	B	373	392	Right-handed alpha
Helix 42	AE6	B	393	401	Right-handed alpha
Helix 43	AE7	B	403	408	Right-handed alpha
Helix 44	AE8	D	47	56	Right-handed alpha
Helix 45	AE9	D	68	71	Right-handed 310
Helix 46	AF1	D	72	76	Right-handed 310
Helix 47	AF2	D	77	89	Right-handed alpha
Helix 48	AF3	D	103	114	Right-handed alpha
Helix 49	AF4	D	119	134	Right-handed alpha
Helix 50	AF5	D	148	162	Right-handed alpha
Helix 51	AF6	D	178	197	Right-handed alpha
Helix 52	AF7	D	207	213	Right-handed alpha

There are 10 sheets in PDB entry 9W36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	32	first strand
Strand 2	C	6	16	anti-parallel
Strand 3	C	63	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	167	171	parallel
Strand 3	C	199	203	parallel
Strand 4	C	37	41	parallel
Strand 5	C	215	218	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	181	192	anti-parallel
Strand 3	A	146	150	parallel
Strand 4	A	202	205	anti-parallel
Strand 5	A	111	117	parallel
Strand 6	A	95	102	anti-parallel
Strand 7	A	220	223	anti-parallel
Strand 8	A	66	74	anti-parallel
Strand 9	A	248	252	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	181	192	anti-parallel
Strand 3	A	164	170	anti-parallel
Strand 4	A	95	102	anti-parallel
Strand 5	A	220	223	anti-parallel
Strand 6	A	66	74	anti-parallel
Strand 7	A	248	252	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	226	227	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	180	192	anti-parallel
Strand 3	B	146	150	parallel
Strand 4	B	202	206	anti-parallel
Strand 5	B	112	117	parallel
Strand 6	B	94	104	anti-parallel
Strand 7	B	220	224	anti-parallel
Strand 8	B	66	74	anti-parallel
Strand 9	B	248	252	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	180	192	anti-parallel
Strand 3	B	164	171	anti-parallel
Strand 4	B	94	104	anti-parallel
Strand 5	B	220	224	anti-parallel
Strand 6	B	66	74	anti-parallel
Strand 7	B	248	252	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	6	12	anti-parallel
Strand 3	D	63	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	41	first strand
Strand 2	D	215	218	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	199	201	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W36

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W36