Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W3U entry

There are 4 chains in PDB entry 9W3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 797
B	MET 1	SER 797
C	MET 1	SER 797
D	MET 1	SER 797

There are137 helices in PDB entry 9W3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	32	Right-handed alpha
Helix 2	AA2	A	34	38	Right-handed 310
Helix 3	AA3	A	49	57	Right-handed alpha
Helix 4	AA4	A	73	83	Right-handed alpha
Helix 5	AA5	A	104	115	Right-handed alpha
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	148	157	Right-handed alpha
Helix 8	AA8	A	174	189	Right-handed alpha
Helix 9	AA9	A	226	237	Right-handed alpha
Helix 10	AB1	A	239	243	Right-handed 310
Helix 11	AB2	A	244	258	Right-handed alpha
Helix 12	AB3	A	271	286	Right-handed alpha
Helix 13	AB4	A	289	310	Right-handed alpha
Helix 14	AB5	A	336	341	Right-handed alpha
Helix 15	AB6	A	347	356	Right-handed alpha
Helix 16	AB7	A	375	383	Right-handed alpha
Helix 17	AB8	A	385	390	Right-handed alpha
Helix 18	AB9	A	418	427	Right-handed alpha
Helix 19	AC1	A	429	434	Right-handed alpha
Helix 20	AC2	A	458	471	Right-handed alpha
Helix 21	AC3	A	472	475	Right-handed 310
Helix 22	AC4	A	501	521	Right-handed alpha
Helix 23	AC5	A	532	551	Right-handed alpha
Helix 24	AC6	A	579	581	Right-handed 310
Helix 25	AC7	A	582	595	Right-handed alpha
Helix 26	AC8	A	598	607	Right-handed alpha
Helix 27	AC9	A	610	632	Right-handed alpha
Helix 28	AD1	A	635	638	Right-handed 310
Helix 29	AD2	A	639	657	Right-handed alpha
Helix 30	AD3	A	662	674	Right-handed alpha
Helix 31	AD4	A	711	725	Right-handed alpha
Helix 32	AD5	A	735	746	Right-handed alpha
Helix 33	AD6	A	755	768	Right-handed alpha
Helix 34	AD7	A	780	793	Right-handed alpha
Helix 35	AD8	B	25	32	Right-handed alpha
Helix 36	AD9	B	34	38	Right-handed 310
Helix 37	AE1	B	49	57	Right-handed alpha
Helix 38	AE2	B	73	83	Right-handed alpha
Helix 39	AE3	B	104	115	Right-handed alpha
Helix 40	AE4	B	116	127	Right-handed alpha
Helix 41	AE5	B	148	157	Right-handed alpha
Helix 42	AE6	B	174	189	Right-handed alpha
Helix 43	AE7	B	226	237	Right-handed alpha
Helix 44	AE8	B	239	243	Right-handed 310
Helix 45	AE9	B	244	258	Right-handed alpha
Helix 46	AF1	B	271	286	Right-handed alpha
Helix 47	AF2	B	289	310	Right-handed alpha
Helix 48	AF3	B	336	341	Right-handed alpha
Helix 49	AF4	B	347	356	Right-handed alpha
Helix 50	AF5	B	375	383	Right-handed alpha
Helix 51	AF6	B	385	390	Right-handed alpha
Helix 52	AF7	B	418	427	Right-handed alpha
Helix 53	AF8	B	429	434	Right-handed alpha
Helix 54	AF9	B	458	471	Right-handed alpha
Helix 55	AG1	B	472	475	Right-handed 310
Helix 56	AG2	B	501	521	Right-handed alpha
Helix 57	AG3	B	532	551	Right-handed alpha
Helix 58	AG4	B	579	581	Right-handed 310
Helix 59	AG5	B	582	595	Right-handed alpha
Helix 60	AG6	B	598	607	Right-handed alpha
Helix 61	AG7	B	610	632	Right-handed alpha
Helix 62	AG8	B	635	638	Right-handed 310
Helix 63	AG9	B	639	657	Right-handed alpha
Helix 64	AH1	B	662	674	Right-handed alpha
Helix 65	AH2	B	711	726	Right-handed alpha
Helix 66	AH3	B	726	731	Right-handed alpha
Helix 67	AH4	B	735	746	Right-handed alpha
Helix 68	AH5	B	755	768	Right-handed alpha
Helix 69	AH6	B	780	793	Right-handed alpha
Helix 70	AH7	C	25	32	Right-handed alpha
Helix 71	AH8	C	34	38	Right-handed 310
Helix 72	AH9	C	49	57	Right-handed alpha
Helix 73	AI1	C	73	83	Right-handed alpha
Helix 74	AI2	C	104	115	Right-handed alpha
Helix 75	AI3	C	116	127	Right-handed alpha
Helix 76	AI4	C	148	157	Right-handed alpha
Helix 77	AI5	C	174	189	Right-handed alpha
Helix 78	AI6	C	226	237	Right-handed alpha
Helix 79	AI7	C	239	243	Right-handed 310
Helix 80	AI8	C	244	258	Right-handed alpha
Helix 81	AI9	C	271	286	Right-handed alpha
Helix 82	AJ1	C	289	310	Right-handed alpha
Helix 83	AJ2	C	336	341	Right-handed alpha
Helix 84	AJ3	C	347	356	Right-handed alpha
Helix 85	AJ4	C	375	383	Right-handed alpha
Helix 86	AJ5	C	385	390	Right-handed alpha
Helix 87	AJ6	C	418	427	Right-handed alpha
Helix 88	AJ7	C	429	434	Right-handed alpha
Helix 89	AJ8	C	458	471	Right-handed alpha
Helix 90	AJ9	C	472	475	Right-handed 310
Helix 91	AK1	C	501	521	Right-handed alpha
Helix 92	AK2	C	532	551	Right-handed alpha
Helix 93	AK3	C	579	581	Right-handed 310
Helix 94	AK4	C	582	595	Right-handed alpha
Helix 95	AK5	C	598	607	Right-handed alpha
Helix 96	AK6	C	610	632	Right-handed alpha
Helix 97	AK7	C	635	638	Right-handed 310
Helix 98	AK8	C	639	657	Right-handed alpha
Helix 99	AK9	C	662	674	Right-handed alpha
Helix 100	AL1	C	711	725	Right-handed alpha
Helix 101	AL2	C	734	746	Right-handed alpha
Helix 102	AL3	C	755	768	Right-handed alpha
Helix 103	AL4	C	780	793	Right-handed alpha
Helix 104	AL5	D	25	32	Right-handed alpha
Helix 105	AL6	D	34	38	Right-handed 310
Helix 106	AL7	D	49	57	Right-handed alpha
Helix 107	AL8	D	73	83	Right-handed alpha
Helix 108	AL9	D	104	115	Right-handed alpha
Helix 109	AM1	D	116	127	Right-handed alpha
Helix 110	AM2	D	148	157	Right-handed alpha
Helix 111	AM3	D	174	189	Right-handed alpha
Helix 112	AM4	D	226	237	Right-handed alpha
Helix 113	AM5	D	239	243	Right-handed 310
Helix 114	AM6	D	244	258	Right-handed alpha
Helix 115	AM7	D	271	286	Right-handed alpha
Helix 116	AM8	D	289	310	Right-handed alpha
Helix 117	AM9	D	336	341	Right-handed alpha
Helix 118	AN1	D	347	356	Right-handed alpha
Helix 119	AN2	D	375	383	Right-handed alpha
Helix 120	AN3	D	385	390	Right-handed alpha
Helix 121	AN4	D	418	427	Right-handed alpha
Helix 122	AN5	D	429	434	Right-handed alpha
Helix 123	AN6	D	458	471	Right-handed alpha
Helix 124	AN7	D	472	475	Right-handed 310
Helix 125	AN8	D	501	521	Right-handed alpha
Helix 126	AN9	D	532	551	Right-handed alpha
Helix 127	AO1	D	579	581	Right-handed 310
Helix 128	AO2	D	582	595	Right-handed alpha
Helix 129	AO3	D	598	607	Right-handed alpha
Helix 130	AO4	D	610	632	Right-handed alpha
Helix 131	AO5	D	635	638	Right-handed 310
Helix 132	AO6	D	639	657	Right-handed alpha
Helix 133	AO7	D	662	674	Right-handed alpha
Helix 134	AO8	D	711	725	Right-handed alpha
Helix 135	AO9	D	735	746	Right-handed alpha
Helix 136	AP1	D	755	768	Right-handed alpha
Helix 137	AP2	D	780	793	Right-handed alpha

There are 12 sheets in PDB entry 9W3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	88	94	parallel
Strand 3	A	2	7	parallel
Strand 4	A	166	169	parallel
Strand 5	A	192	196	parallel
Strand 6	A	206	207	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	490	first strand
Strand 2	A	447	455	parallel
Strand 3	A	404	409	parallel
Strand 4	A	524	527	parallel
Strand 5	A	554	558	parallel
Strand 6	A	572	575	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	748	749	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	88	94	parallel
Strand 3	B	2	7	parallel
Strand 4	B	166	169	parallel
Strand 5	B	192	196	parallel
Strand 6	B	206	207	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	490	first strand
Strand 2	B	447	455	parallel
Strand 3	B	404	409	parallel
Strand 4	B	524	527	parallel
Strand 5	B	554	558	parallel
Strand 6	B	572	575	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	748	749	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	88	94	parallel
Strand 3	C	2	7	parallel
Strand 4	C	166	169	parallel
Strand 5	C	192	196	parallel
Strand 6	C	206	207	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	490	first strand
Strand 2	C	447	455	parallel
Strand 3	C	404	409	parallel
Strand 4	C	524	527	parallel
Strand 5	C	554	558	parallel
Strand 6	C	572	575	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	748	749	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	88	94	parallel
Strand 3	D	2	7	parallel
Strand 4	D	166	169	parallel
Strand 5	D	192	196	parallel
Strand 6	D	206	207	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	490	first strand
Strand 2	D	447	455	parallel
Strand 3	D	404	409	parallel
Strand 4	D	524	527	parallel
Strand 5	D	554	558	parallel
Strand 6	D	572	575	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	748	749	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3U