Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W3W entry

There are 8 chains in PDB entry 9W3W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	A 1	A 5
2	A 1	A 5
3	A 1	A 5
4	A 1	A 5
A	MET 1	SER 797
B	MET 1	SER 797
C	MET 1	SER 797
D	MET 1	SER 797

There are148 helices in PDB entry 9W3W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	14	Right-handed 310
Helix 2	AA2	A	16	20	Right-handed 310
Helix 3	AA3	A	23	28	Right-handed alpha
Helix 4	AA4	A	30	38	Right-handed alpha
Helix 5	AA5	A	47	53	Right-handed alpha
Helix 6	AA6	A	71	83	Right-handed alpha
Helix 7	AA7	A	103	114	Right-handed alpha
Helix 8	AA8	A	116	128	Right-handed alpha
Helix 9	AA9	A	149	159	Right-handed alpha
Helix 10	AB1	A	174	189	Right-handed alpha
Helix 11	AB2	A	226	237	Right-handed alpha
Helix 12	AB3	A	244	259	Right-handed alpha
Helix 13	AB4	A	271	286	Right-handed alpha
Helix 14	AB5	A	290	311	Right-handed alpha
Helix 15	AB6	A	330	342	Right-handed alpha
Helix 16	AB7	A	347	360	Right-handed alpha
Helix 17	AB8	A	375	381	Right-handed alpha
Helix 18	AB9	A	382	384	Right-handed 310
Helix 19	AC1	A	385	390	Right-handed alpha
Helix 20	AC2	A	418	427	Right-handed alpha
Helix 21	AC3	A	429	434	Right-handed alpha
Helix 22	AC4	A	458	471	Right-handed alpha
Helix 23	AC5	A	472	475	Right-handed 310
Helix 24	AC6	A	501	521	Right-handed alpha
Helix 25	AC7	A	532	551	Right-handed alpha
Helix 26	AC8	A	579	581	Right-handed 310
Helix 27	AC9	A	582	595	Right-handed alpha
Helix 28	AD1	A	598	607	Right-handed alpha
Helix 29	AD2	A	610	632	Right-handed alpha
Helix 30	AD3	A	635	638	Right-handed 310
Helix 31	AD4	A	639	657	Right-handed alpha
Helix 32	AD5	A	662	674	Right-handed alpha
Helix 33	AD6	A	711	724	Right-handed alpha
Helix 34	AD7	A	734	744	Right-handed alpha
Helix 35	AD8	A	755	770	Right-handed alpha
Helix 36	AD9	A	771	773	Right-handed 310
Helix 37	AE1	A	780	795	Right-handed alpha
Helix 38	AE2	B	9	14	Right-handed 310
Helix 39	AE3	B	16	20	Right-handed 310
Helix 40	AE4	B	23	28	Right-handed alpha
Helix 41	AE5	B	30	38	Right-handed alpha
Helix 42	AE6	B	47	53	Right-handed alpha
Helix 43	AE7	B	71	83	Right-handed alpha
Helix 44	AE8	B	103	114	Right-handed alpha
Helix 45	AE9	B	116	128	Right-handed alpha
Helix 46	AF1	B	149	159	Right-handed alpha
Helix 47	AF2	B	174	189	Right-handed alpha
Helix 48	AF3	B	226	237	Right-handed alpha
Helix 49	AF4	B	244	259	Right-handed alpha
Helix 50	AF5	B	271	286	Right-handed alpha
Helix 51	AF6	B	290	311	Right-handed alpha
Helix 52	AF7	B	330	342	Right-handed alpha
Helix 53	AF8	B	347	360	Right-handed alpha
Helix 54	AF9	B	375	381	Right-handed alpha
Helix 55	AG1	B	382	384	Right-handed 310
Helix 56	AG2	B	385	390	Right-handed alpha
Helix 57	AG3	B	418	427	Right-handed alpha
Helix 58	AG4	B	429	434	Right-handed alpha
Helix 59	AG5	B	458	471	Right-handed alpha
Helix 60	AG6	B	472	475	Right-handed 310
Helix 61	AG7	B	501	521	Right-handed alpha
Helix 62	AG8	B	532	551	Right-handed alpha
Helix 63	AG9	B	579	581	Right-handed 310
Helix 64	AH1	B	582	595	Right-handed alpha
Helix 65	AH2	B	598	607	Right-handed alpha
Helix 66	AH3	B	610	632	Right-handed alpha
Helix 67	AH4	B	635	638	Right-handed 310
Helix 68	AH5	B	639	657	Right-handed alpha
Helix 69	AH6	B	662	674	Right-handed alpha
Helix 70	AH7	B	711	724	Right-handed alpha
Helix 71	AH8	B	734	744	Right-handed alpha
Helix 72	AH9	B	755	770	Right-handed alpha
Helix 73	AI1	B	771	773	Right-handed 310
Helix 74	AI2	B	780	795	Right-handed alpha
Helix 75	AI3	C	9	14	Right-handed 310
Helix 76	AI4	C	16	20	Right-handed 310
Helix 77	AI5	C	23	28	Right-handed alpha
Helix 78	AI6	C	30	38	Right-handed alpha
Helix 79	AI7	C	47	53	Right-handed alpha
Helix 80	AI8	C	71	83	Right-handed alpha
Helix 81	AI9	C	103	114	Right-handed alpha
Helix 82	AJ1	C	116	128	Right-handed alpha
Helix 83	AJ2	C	149	159	Right-handed alpha
Helix 84	AJ3	C	174	189	Right-handed alpha
Helix 85	AJ4	C	226	237	Right-handed alpha
Helix 86	AJ5	C	244	259	Right-handed alpha
Helix 87	AJ6	C	271	286	Right-handed alpha
Helix 88	AJ7	C	290	311	Right-handed alpha
Helix 89	AJ8	C	330	342	Right-handed alpha
Helix 90	AJ9	C	347	360	Right-handed alpha
Helix 91	AK1	C	375	381	Right-handed alpha
Helix 92	AK2	C	382	384	Right-handed 310
Helix 93	AK3	C	385	390	Right-handed alpha
Helix 94	AK4	C	418	427	Right-handed alpha
Helix 95	AK5	C	429	434	Right-handed alpha
Helix 96	AK6	C	458	471	Right-handed alpha
Helix 97	AK7	C	472	475	Right-handed 310
Helix 98	AK8	C	501	521	Right-handed alpha
Helix 99	AK9	C	532	551	Right-handed alpha
Helix 100	AL1	C	579	581	Right-handed 310
Helix 101	AL2	C	582	595	Right-handed alpha
Helix 102	AL3	C	598	607	Right-handed alpha
Helix 103	AL4	C	610	632	Right-handed alpha
Helix 104	AL5	C	635	638	Right-handed 310
Helix 105	AL6	C	639	657	Right-handed alpha
Helix 106	AL7	C	662	674	Right-handed alpha
Helix 107	AL8	C	711	725	Right-handed alpha
Helix 108	AL9	C	734	744	Right-handed alpha
Helix 109	AM1	C	755	770	Right-handed alpha
Helix 110	AM2	C	771	773	Right-handed 310
Helix 111	AM3	C	780	795	Right-handed alpha
Helix 112	AM4	D	9	14	Right-handed 310
Helix 113	AM5	D	16	20	Right-handed 310
Helix 114	AM6	D	23	28	Right-handed alpha
Helix 115	AM7	D	30	38	Right-handed alpha
Helix 116	AM8	D	47	53	Right-handed alpha
Helix 117	AM9	D	71	83	Right-handed alpha
Helix 118	AN1	D	103	114	Right-handed alpha
Helix 119	AN2	D	116	128	Right-handed alpha
Helix 120	AN3	D	149	159	Right-handed alpha
Helix 121	AN4	D	174	189	Right-handed alpha
Helix 122	AN5	D	226	237	Right-handed alpha
Helix 123	AN6	D	244	259	Right-handed alpha
Helix 124	AN7	D	271	286	Right-handed alpha
Helix 125	AN8	D	290	311	Right-handed alpha
Helix 126	AN9	D	330	342	Right-handed alpha
Helix 127	AO1	D	347	360	Right-handed alpha
Helix 128	AO2	D	375	381	Right-handed alpha
Helix 129	AO3	D	382	384	Right-handed 310
Helix 130	AO4	D	385	390	Right-handed alpha
Helix 131	AO5	D	418	427	Right-handed alpha
Helix 132	AO6	D	429	434	Right-handed alpha
Helix 133	AO7	D	458	471	Right-handed alpha
Helix 134	AO8	D	472	475	Right-handed 310
Helix 135	AO9	D	501	521	Right-handed alpha
Helix 136	AP1	D	532	551	Right-handed alpha
Helix 137	AP2	D	579	581	Right-handed 310
Helix 138	AP3	D	582	595	Right-handed alpha
Helix 139	AP4	D	598	607	Right-handed alpha
Helix 140	AP5	D	610	632	Right-handed alpha
Helix 141	AP6	D	635	638	Right-handed 310
Helix 142	AP7	D	639	657	Right-handed alpha
Helix 143	AP8	D	662	674	Right-handed alpha
Helix 144	AP9	D	711	724	Right-handed alpha
Helix 145	AQ1	D	734	744	Right-handed alpha
Helix 146	AQ2	D	755	770	Right-handed alpha
Helix 147	AQ3	D	771	773	Right-handed 310
Helix 148	AQ4	D	780	795	Right-handed alpha

There are 12 sheets in PDB entry 9W3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	139	first strand
Strand 2	A	88	96	parallel
Strand 3	A	2	7	parallel
Strand 4	A	166	169	parallel
Strand 5	A	192	195	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	490	first strand
Strand 2	A	447	455	parallel
Strand 3	A	404	409	parallel
Strand 4	A	524	528	parallel
Strand 5	A	554	560	parallel
Strand 6	A	570	575	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	706	first strand
Strand 2	A	748	749	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	139	first strand
Strand 2	B	88	96	parallel
Strand 3	B	2	7	parallel
Strand 4	B	166	169	parallel
Strand 5	B	192	195	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	490	first strand
Strand 2	B	447	455	parallel
Strand 3	B	404	409	parallel
Strand 4	B	524	528	parallel
Strand 5	B	554	560	parallel
Strand 6	B	570	575	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	705	706	first strand
Strand 2	B	748	749	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	139	first strand
Strand 2	C	88	96	parallel
Strand 3	C	2	7	parallel
Strand 4	C	166	169	parallel
Strand 5	C	192	195	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	490	first strand
Strand 2	C	447	455	parallel
Strand 3	C	404	409	parallel
Strand 4	C	524	528	parallel
Strand 5	C	554	560	parallel
Strand 6	C	570	575	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	705	706	first strand
Strand 2	C	748	749	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	139	first strand
Strand 2	D	88	96	parallel
Strand 3	D	2	7	parallel
Strand 4	D	166	169	parallel
Strand 5	D	192	195	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	490	first strand
Strand 2	D	447	455	parallel
Strand 3	D	404	409	parallel
Strand 4	D	524	528	parallel
Strand 5	D	554	560	parallel
Strand 6	D	570	575	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	705	706	first strand
Strand 2	D	748	749	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W3W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3W