Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W3Z entry

There are 8 chains in PDB entry 9W3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 71	ARG 385
C	ILE 71	ASP 391
B	LYS 19	MET 150
D	PRO 16	MET 150
E	ILE 71	ARG 385
G	ILE 71	ASP 391
F	LYS 19	MET 150
H	PRO 16	MET 150

There are 66 helices in PDB entry 9W3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	80	Right-handed alpha
Helix 2	AA2	A	84	101	Right-handed alpha
Helix 3	AA3	A	110	115	Right-handed alpha
Helix 4	AA4	A	130	154	Right-handed alpha
Helix 5	AA5	A	154	159	Right-handed alpha
Helix 6	AA6	A	168	196	Right-handed alpha
Helix 7	AA7	A	217	239	Right-handed alpha
Helix 8	AA8	A	248	269	Right-handed alpha
Helix 9	AA9	A	274	298	Right-handed alpha
Helix 10	AB1	A	302	332	Right-handed alpha
Helix 11	AB2	A	352	385	Right-handed alpha
Helix 12	AB3	C	72	82	Right-handed alpha
Helix 13	AB4	C	84	100	Right-handed alpha
Helix 14	AB5	C	108	113	Right-handed 310
Helix 15	AB6	C	130	154	Right-handed alpha
Helix 16	AB7	C	154	162	Right-handed alpha
Helix 17	AB8	C	166	187	Right-handed alpha
Helix 18	AB9	C	187	196	Right-handed alpha
Helix 19	AC1	C	203	209	Right-handed alpha
Helix 20	AC2	C	217	240	Right-handed alpha
Helix 21	AC3	C	248	269	Right-handed alpha
Helix 22	AC4	C	271	298	Right-handed alpha
Helix 23	AC5	C	302	336	Right-handed alpha
Helix 24	AC6	C	352	364	Right-handed alpha
Helix 25	AC7	C	365	387	Right-handed alpha
Helix 26	AC8	B	20	47	Right-handed alpha
Helix 27	AC9	B	48	52	Right-handed alpha
Helix 28	AD1	B	78	92	Right-handed alpha
Helix 29	AD2	B	134	141	Right-handed alpha
Helix 30	AD3	D	19	47	Right-handed alpha
Helix 31	AD4	D	48	53	Right-handed alpha
Helix 32	AD5	D	76	91	Right-handed alpha
Helix 33	AD6	D	135	140	Right-handed alpha
Helix 34	AD7	E	72	80	Right-handed alpha
Helix 35	AD8	E	84	101	Right-handed alpha
Helix 36	AD9	E	110	115	Right-handed alpha
Helix 37	AE1	E	130	154	Right-handed alpha
Helix 38	AE2	E	154	159	Right-handed alpha
Helix 39	AE3	E	168	196	Right-handed alpha
Helix 40	AE4	E	217	239	Right-handed alpha
Helix 41	AE5	E	248	269	Right-handed alpha
Helix 42	AE6	E	271	298	Right-handed alpha
Helix 43	AE7	E	302	332	Right-handed alpha
Helix 44	AE8	E	352	385	Right-handed alpha
Helix 45	AE9	G	72	82	Right-handed alpha
Helix 46	AF1	G	84	100	Right-handed alpha
Helix 47	AF2	G	108	113	Right-handed 310
Helix 48	AF3	G	130	154	Right-handed alpha
Helix 49	AF4	G	154	162	Right-handed alpha
Helix 50	AF5	G	166	187	Right-handed alpha
Helix 51	AF6	G	187	196	Right-handed alpha
Helix 52	AF7	G	203	209	Right-handed alpha
Helix 53	AF8	G	217	240	Right-handed alpha
Helix 54	AF9	G	248	269	Right-handed alpha
Helix 55	AG1	G	271	298	Right-handed alpha
Helix 56	AG2	G	302	336	Right-handed alpha
Helix 57	AG3	G	352	364	Right-handed alpha
Helix 58	AG4	G	365	387	Right-handed alpha
Helix 59	AG5	F	20	47	Right-handed alpha
Helix 60	AG6	F	48	52	Right-handed alpha
Helix 61	AG7	F	78	92	Right-handed alpha
Helix 62	AG8	F	134	141	Right-handed alpha
Helix 63	AG9	H	19	47	Right-handed alpha
Helix 64	AH1	H	48	53	Right-handed alpha
Helix 65	AH2	H	76	91	Right-handed alpha
Helix 66	AH3	H	135	140	Right-handed alpha

There are 8 sheets in PDB entry 9W3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	215	216	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	65	71	anti-parallel
Strand 3	B	125	131	anti-parallel
Strand 4	B	99	105	anti-parallel
Strand 5	B	148	150	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	61	first strand
Strand 2	D	64	66	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	105	first strand
Strand 2	D	125	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	127	first strand
Strand 2	G	215	216	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	59	first strand
Strand 2	F	65	71	anti-parallel
Strand 3	F	125	131	anti-parallel
Strand 4	F	99	105	anti-parallel
Strand 5	F	148	150	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	64	66	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	105	first strand
Strand 2	H	125	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W3Z