Analysis of interatomic Contacts of Structural Units in PDB entry:
9W47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W47 entry

There is 1 chain in PDB entry 9W47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27LYS 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9W47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
143 152Right-handed alpha
Helix 3
AA3
A
157 165Right-handed alpha
Helix 4
AA4
A
171 184Right-handed alpha
Helix 5
AA5
A
210 225Right-handed alpha
Helix 6
AA6
A
269 278Right-handed alpha
Helix 7
AA7
A
288 293Right-handed 310
Helix 8
AA8
A
297 301Right-handed 310
Helix 9
AA9
A
313 326Right-handed alpha
Helix 10
AB1
A
343 348Right-handed alpha
Helix 11
AB2
A
355 362Right-handed 310
Helix 12
AB3
A
376 382Right-handed alpha
Helix 13
AB4
A
398 402Right-handed 310
Helix 14
AB5
A
417 428Right-handed alpha
Helix 15
AB6
A
428 447Right-handed alpha
Helix 16
AB7
A
448 466Right-handed alpha
Helix 17
AB8
A
483 487Right-handed 310
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There are 8 sheets in PDB entry 9W47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
85 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
107 116anti-parallel
Strand 3
A
119 120anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
107 116anti-parallel
Strand 3
A
126 132anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
198 204anti-parallel
Strand 4
A
478 479anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
265 266parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
394 395anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 310first strand
Strand 2
A
330 336parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 367first strand
Strand 2
A
386 390parallel
Strand 3
A
409 411parallel
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