Analysis of interatomic Contacts of Structural Units in PDB entry:
9W4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W4R entry

There are 3 chains in PDB entry 9W4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 274PHE 1277
B
 PRO 35LYS 177
C
 G 8 C 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 9W4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
274 286Right-handed alpha
Helix 2
AA2
A
315 324Right-handed alpha
Helix 3
AA3
A
325 341Right-handed alpha
Helix 4
AA4
A
342 344Right-handed 310
Helix 5
AA5
A
348 366Right-handed alpha
Helix 6
AA6
A
369 391Right-handed alpha
Helix 7
AA7
A
400 404Right-handed alpha
Helix 8
AA8
A
424 439Right-handed alpha
Helix 9
AA9
A
473 490Right-handed alpha
Helix 10
AB1
A
492 506Right-handed alpha
Helix 11
AB2
A
511 515Right-handed 310
Helix 12
AB3
A
518 533Right-handed alpha
Helix 13
AB4
A
551 557Right-handed 310
Helix 14
AB5
A
628 643Right-handed alpha
Helix 15
AB6
A
689 708Right-handed alpha
Helix 16
AB7
A
901 907Right-handed alpha
Helix 17
AB8
A
944 961Right-handed alpha
Helix 18
AB9
A
965 987Right-handed alpha
Helix 19
AC1
A
997 1000Right-handed 310
Helix 20
AC2
A
1026 1041Right-handed alpha
Helix 21
AC3
A
1077 1092Right-handed alpha
Helix 22
AC4
A
1092 1109Right-handed alpha
Helix 23
AC5
A
1113 1117Right-handed 310
Helix 24
AC6
A
1120 1135Right-handed alpha
Helix 25
AC7
A
1184 1196Right-handed alpha
Helix 26
AC8
A
1216 1221Right-handed alpha
Helix 27
AC9
A
1222 1225Right-handed 310
Helix 28
AD1
A
1239 1243Right-handed 310
Helix 29
AD2
A
1244 1261Right-handed alpha
Helix 30
AD3
A
1272 1277Right-handed alpha
Helix 31
AD4
B
111 115Right-handed 310
Helix 32
AD5
B
170 174Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 9W4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
304 306anti-parallel
Strand 3
A
312 313anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
412 418anti-parallel
Strand 3
A
465 471parallel
Strand 4
A
455 460anti-parallel
Strand 5
A
442 448anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 563first strand
Strand 2
A
567 571anti-parallel
Strand 3
A
614 618anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
649 650first strand
Strand 2
A
659 660anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 675first strand
Strand 2
A
678 682anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
991 996first strand
Strand 2
A
1010 1016anti-parallel
Strand 3
A
1067 1073parallel
Strand 4
A
1057 1062anti-parallel
Strand 5
A
1044 1050anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 47first strand
Strand 2
B
53 61anti-parallel
Strand 3
B
64 75anti-parallel
Strand 4
B
104 110parallel
Strand 5
B
92 99anti-parallel
Strand 6
B
39 47anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il