Analysis of interatomic Contacts of Structural Units in PDB entry:
9W56

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W56 entry

There are 12 chains in PDB entry 9W56 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	GLU 386
B	ALA 391	ALA 480
C	GLY 522	VAL 673
D	ALA 15	GLU 386
E	ALA 391	ALA 480
F	GLY 522	VAL 673
G	ALA 15	GLU 386
H	ALA 391	ALA 480
I	GLY 521	VAL 673
J	ALA 15	GLU 386
K	ALA 391	ALA 480
L	GLY 522	VAL 673

There are103 helices in PDB entry 9W56. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	38	48	Right-handed alpha
Helix 3	AA3	A	67	80	Right-handed alpha
Helix 4	AA4	A	129	139	Right-handed alpha
Helix 5	AA5	A	205	211	Right-handed alpha
Helix 6	AA6	A	212	217	Right-handed alpha
Helix 7	AA7	A	218	220	Right-handed 310
Helix 8	AA8	A	222	226	Right-handed 310
Helix 9	AA9	A	229	243	Right-handed alpha
Helix 10	AB1	A	258	274	Right-handed alpha
Helix 11	AB2	A	277	285	Right-handed alpha
Helix 12	AB3	A	289	300	Right-handed alpha
Helix 13	AB4	A	309	320	Right-handed alpha
Helix 14	AB5	A	334	343	Right-handed alpha
Helix 15	AB6	B	406	411	Right-handed alpha
Helix 16	AB7	B	420	430	Right-handed alpha
Helix 17	AB8	B	445	449	Right-handed 310
Helix 18	AB9	B	450	462	Right-handed alpha
Helix 19	AC1	B	464	473	Right-handed alpha
Helix 20	AC2	C	565	573	Right-handed alpha
Helix 21	AC3	C	575	592	Right-handed alpha
Helix 22	AC4	C	593	597	Right-handed 310
Helix 23	AC5	C	624	635	Right-handed alpha
Helix 24	AC6	C	644	648	Right-handed 310
Helix 25	AC7	C	653	671	Right-handed alpha
Helix 26	AC8	D	16	29	Right-handed alpha
Helix 27	AC9	D	38	48	Right-handed alpha
Helix 28	AD1	D	67	80	Right-handed alpha
Helix 29	AD2	D	129	139	Right-handed alpha
Helix 30	AD3	D	205	211	Right-handed alpha
Helix 31	AD4	D	212	217	Right-handed alpha
Helix 32	AD5	D	218	220	Right-handed 310
Helix 33	AD6	D	222	228	Right-handed 310
Helix 34	AD7	D	229	243	Right-handed alpha
Helix 35	AD8	D	258	274	Right-handed alpha
Helix 36	AD9	D	277	285	Right-handed alpha
Helix 37	AE1	D	289	300	Right-handed alpha
Helix 38	AE2	D	302	306	Right-handed 310
Helix 39	AE3	D	309	320	Right-handed alpha
Helix 40	AE4	D	334	343	Right-handed alpha
Helix 41	AE5	E	406	411	Right-handed alpha
Helix 42	AE6	E	420	430	Right-handed alpha
Helix 43	AE7	E	445	449	Right-handed 310
Helix 44	AE8	E	450	462	Right-handed alpha
Helix 45	AE9	E	464	473	Right-handed alpha
Helix 46	AF1	F	565	573	Right-handed alpha
Helix 47	AF2	F	575	592	Right-handed alpha
Helix 48	AF3	F	593	597	Right-handed 310
Helix 49	AF4	F	624	634	Right-handed alpha
Helix 50	AF5	F	644	648	Right-handed 310
Helix 51	AF6	F	653	671	Right-handed alpha
Helix 52	AF7	G	16	29	Right-handed alpha
Helix 53	AF8	G	38	48	Right-handed alpha
Helix 54	AF9	G	67	80	Right-handed alpha
Helix 55	AG1	G	129	139	Right-handed alpha
Helix 56	AG2	G	205	211	Right-handed alpha
Helix 57	AG3	G	212	217	Right-handed alpha
Helix 58	AG4	G	218	220	Right-handed 310
Helix 59	AG5	G	222	228	Right-handed 310
Helix 60	AG6	G	229	238	Right-handed alpha
Helix 61	AG7	G	238	243	Right-handed alpha
Helix 62	AG8	G	258	274	Right-handed alpha
Helix 63	AG9	G	277	285	Right-handed alpha
Helix 64	AH1	G	289	300	Right-handed alpha
Helix 65	AH2	G	302	306	Right-handed 310
Helix 66	AH3	G	309	320	Right-handed alpha
Helix 67	AH4	G	334	343	Right-handed alpha
Helix 68	AH5	H	406	411	Right-handed alpha
Helix 69	AH6	H	420	430	Right-handed alpha
Helix 70	AH7	H	445	449	Right-handed 310
Helix 71	AH8	H	450	460	Right-handed alpha
Helix 72	AH9	H	464	473	Right-handed alpha
Helix 73	AI1	I	565	573	Right-handed alpha
Helix 74	AI2	I	575	592	Right-handed alpha
Helix 75	AI3	I	593	597	Right-handed 310
Helix 76	AI4	I	624	634	Right-handed alpha
Helix 77	AI5	I	644	648	Right-handed 310
Helix 78	AI6	I	653	670	Right-handed alpha
Helix 79	AI7	J	16	29	Right-handed alpha
Helix 80	AI8	J	38	48	Right-handed alpha
Helix 81	AI9	J	67	80	Right-handed alpha
Helix 82	AJ1	J	129	139	Right-handed alpha
Helix 83	AJ2	J	205	211	Right-handed alpha
Helix 84	AJ3	J	212	217	Right-handed alpha
Helix 85	AJ4	J	218	220	Right-handed 310
Helix 86	AJ5	J	222	228	Right-handed 310
Helix 87	AJ6	J	229	243	Right-handed alpha
Helix 88	AJ7	J	258	274	Right-handed alpha
Helix 89	AJ8	J	277	285	Right-handed alpha
Helix 90	AJ9	J	289	300	Right-handed alpha
Helix 91	AK1	J	309	320	Right-handed alpha
Helix 92	AK2	J	334	343	Right-handed alpha
Helix 93	AK3	K	406	411	Right-handed alpha
Helix 94	AK4	K	420	430	Right-handed alpha
Helix 95	AK5	K	445	449	Right-handed 310
Helix 96	AK6	K	450	460	Right-handed alpha
Helix 97	AK7	K	464	473	Right-handed alpha
Helix 98	AK8	L	565	573	Right-handed alpha
Helix 99	AK9	L	575	592	Right-handed alpha
Helix 100	AL1	L	593	597	Right-handed 310
Helix 101	AL2	L	624	634	Right-handed alpha
Helix 102	AL3	L	644	648	Right-handed 310
Helix 103	AL4	L	653	670	Right-handed alpha

There are 32 sheets in PDB entry 9W56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	83	87	parallel
Strand 3	A	60	64	parallel
Strand 4	B	400	403	parallel
Strand 5	C	640	642	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	118	119	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	A	143	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	195	198	anti-parallel
Strand 3	C	533	536	parallel
Strand 4	C	542	544	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	398	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	352	359	anti-parallel
Strand 4	B	414	416	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	564	first strand
Strand 2	B	435	442	anti-parallel
Strand 3	C	599	607	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	83	87	parallel
Strand 3	D	60	64	parallel
Strand 4	E	400	403	parallel
Strand 5	F	640	642	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	118	119	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	326	329	anti-parallel
Strand 3	D	143	146	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	204	first strand
Strand 2	D	195	198	anti-parallel
Strand 3	F	533	536	parallel
Strand 4	F	542	544	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	248	first strand
Strand 2	D	254	256	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	398	first strand
Strand 2	D	379	385	anti-parallel
Strand 3	D	352	359	anti-parallel
Strand 4	E	414	416	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	556	564	first strand
Strand 2	E	435	442	anti-parallel
Strand 3	F	599	607	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	83	87	parallel
Strand 3	G	60	64	parallel
Strand 4	H	400	403	parallel
Strand 5	I	640	642	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	101	first strand
Strand 2	G	118	119	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	126	first strand
Strand 2	G	326	329	anti-parallel
Strand 3	G	143	146	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	168	first strand
Strand 2	G	175	177	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	204	first strand
Strand 2	G	195	198	anti-parallel
Strand 3	I	533	536	parallel
Strand 4	I	542	544	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	246	248	first strand
Strand 2	G	254	256	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	394	398	first strand
Strand 2	G	379	385	anti-parallel
Strand 3	G	352	359	anti-parallel
Strand 4	H	414	416	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	556	564	first strand
Strand 2	H	435	442	anti-parallel
Strand 3	I	599	607	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	348	349	first strand
Strand 2	J	83	87	parallel
Strand 3	J	60	64	parallel
Strand 4	K	400	403	parallel
Strand 5	L	640	642	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	100	101	first strand
Strand 2	J	118	119	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	126	first strand
Strand 2	J	326	329	anti-parallel
Strand 3	J	143	146	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	166	168	first strand
Strand 2	J	175	177	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	201	204	first strand
Strand 2	J	195	198	anti-parallel
Strand 3	L	533	536	parallel
Strand 4	L	542	544	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	246	248	first strand
Strand 2	J	254	256	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	394	398	first strand
Strand 2	J	379	385	anti-parallel
Strand 3	J	352	359	anti-parallel
Strand 4	K	414	416	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	556	564	first strand
Strand 2	K	435	442	anti-parallel
Strand 3	L	599	607	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W56

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W56