Analysis of interatomic Contacts of Structural Units in PDB entry:
9W57

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W57 entry

There are 6 chains in PDB entry 9W57 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	GLU 386
B	ALA 392	ALA 480
C	GLY 522	VAL 673
D	ALA 15	GLU 386
E	ALA 392	ALA 480
F	GLY 522	VAL 673

There are 48 helices in PDB entry 9W57. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	38	48	Right-handed alpha
Helix 3	AA3	A	67	80	Right-handed alpha
Helix 4	AA4	A	129	139	Right-handed alpha
Helix 5	AA5	A	205	211	Right-handed alpha
Helix 6	AA6	A	212	219	Right-handed alpha
Helix 7	AA7	A	222	226	Right-handed 310
Helix 8	AA8	A	229	243	Right-handed alpha
Helix 9	AA9	A	258	274	Right-handed alpha
Helix 10	AB1	A	277	284	Right-handed alpha
Helix 11	AB2	A	289	300	Right-handed alpha
Helix 12	AB3	A	309	316	Right-handed alpha
Helix 13	AB4	A	334	343	Right-handed alpha
Helix 14	AB5	B	406	411	Right-handed alpha
Helix 15	AB6	B	420	430	Right-handed alpha
Helix 16	AB7	B	445	449	Right-handed 310
Helix 17	AB8	B	450	460	Right-handed alpha
Helix 18	AB9	B	464	473	Right-handed alpha
Helix 19	AC1	C	565	572	Right-handed alpha
Helix 20	AC2	C	575	592	Right-handed alpha
Helix 21	AC3	C	593	597	Right-handed 310
Helix 22	AC4	C	624	634	Right-handed alpha
Helix 23	AC5	C	653	670	Right-handed alpha
Helix 24	AC6	D	16	29	Right-handed alpha
Helix 25	AC7	D	38	48	Right-handed alpha
Helix 26	AC8	D	67	80	Right-handed alpha
Helix 27	AC9	D	129	139	Right-handed alpha
Helix 28	AD1	D	205	211	Right-handed alpha
Helix 29	AD2	D	212	219	Right-handed alpha
Helix 30	AD3	D	222	226	Right-handed 310
Helix 31	AD4	D	229	243	Right-handed alpha
Helix 32	AD5	D	258	274	Right-handed alpha
Helix 33	AD6	D	277	284	Right-handed alpha
Helix 34	AD7	D	289	300	Right-handed alpha
Helix 35	AD8	D	302	306	Right-handed 310
Helix 36	AD9	D	309	316	Right-handed alpha
Helix 37	AE1	D	334	342	Right-handed alpha
Helix 38	AE2	D	343	345	Right-handed 310
Helix 39	AE3	E	406	411	Right-handed alpha
Helix 40	AE4	E	420	430	Right-handed alpha
Helix 41	AE5	E	445	449	Right-handed 310
Helix 42	AE6	E	450	462	Right-handed alpha
Helix 43	AE7	E	464	473	Right-handed alpha
Helix 44	AE8	F	565	573	Right-handed alpha
Helix 45	AE9	F	575	592	Right-handed alpha
Helix 46	AF1	F	593	597	Right-handed 310
Helix 47	AF2	F	624	634	Right-handed alpha
Helix 48	AF3	F	653	670	Right-handed alpha

There are 16 sheets in PDB entry 9W57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	83	87	parallel
Strand 3	A	60	64	parallel
Strand 4	B	400	403	parallel
Strand 5	C	640	642	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	118	119	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	126	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	A	143	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	204	first strand
Strand 2	A	195	198	anti-parallel
Strand 3	C	533	536	parallel
Strand 4	C	542	544	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	398	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	352	359	anti-parallel
Strand 4	B	414	416	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	556	564	first strand
Strand 2	B	435	442	anti-parallel
Strand 3	C	599	607	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	83	87	parallel
Strand 3	D	60	64	parallel
Strand 4	E	400	403	parallel
Strand 5	F	640	642	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	118	119	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	326	329	anti-parallel
Strand 3	D	143	146	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	204	first strand
Strand 2	D	195	198	anti-parallel
Strand 3	F	533	536	parallel
Strand 4	F	542	544	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	248	first strand
Strand 2	D	254	256	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	394	398	first strand
Strand 2	D	379	385	anti-parallel
Strand 3	D	352	359	anti-parallel
Strand 4	E	414	416	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	556	564	first strand
Strand 2	E	435	442	anti-parallel
Strand 3	F	599	607	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W57

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W57