Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W5I entry

There are 6 chains in PDB entry 9W5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ILE 690
B	GLU 11	ILE 690
C	MET 1	ASN 129
D	GLU 46	ALA 859
E	U 1	U 22
F	C 1	U 22

There are 79 helices in PDB entry 9W5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	35	37	Right-handed 310
Helix 3	AA3	A	38	58	Right-handed alpha
Helix 4	AA4	A	59	60	Right-handed 310
Helix 5	AA5	A	61	66	Right-handed 310
Helix 6	AA6	A	94	103	Right-handed alpha
Helix 7	AA7	A	108	117	Right-handed alpha
Helix 8	AA8	A	131	138	Right-handed 310
Helix 9	AA9	A	190	193	Right-handed 310
Helix 10	AB1	A	194	206	Right-handed alpha
Helix 11	AB2	A	287	291	Right-handed 310
Helix 12	AB3	A	297	310	Right-handed alpha
Helix 13	AB4	A	371	375	Right-handed 310
Helix 14	AB5	A	398	420	Right-handed alpha
Helix 15	AB6	A	422	433	Right-handed alpha
Helix 16	AB7	A	433	444	Right-handed alpha
Helix 17	AB8	A	447	452	Right-handed alpha
Helix 18	AB9	A	469	476	Right-handed alpha
Helix 19	AC1	A	490	496	Right-handed alpha
Helix 20	AC2	A	500	506	Right-handed alpha
Helix 21	AC3	A	515	525	Right-handed alpha
Helix 22	AC4	A	546	560	Right-handed alpha
Helix 23	AC5	A	560	571	Right-handed alpha
Helix 24	AC6	A	599	608	Right-handed alpha
Helix 25	AC7	A	615	619	Right-handed 310
Helix 26	AC8	A	632	645	Right-handed alpha
Helix 27	AC9	A	648	666	Right-handed alpha
Helix 28	AD1	A	672	689	Right-handed alpha
Helix 29	AD2	B	20	31	Right-handed alpha
Helix 30	AD3	B	37	59	Right-handed alpha
Helix 31	AD4	B	60	66	Right-handed 310
Helix 32	AD5	B	94	101	Right-handed alpha
Helix 33	AD6	B	108	117	Right-handed alpha
Helix 34	AD7	B	131	138	Right-handed 310
Helix 35	AD8	B	189	193	Right-handed 310
Helix 36	AD9	B	194	206	Right-handed alpha
Helix 37	AE1	B	287	291	Right-handed 310
Helix 38	AE2	B	292	296	Right-handed 310
Helix 39	AE3	B	297	310	Right-handed alpha
Helix 40	AE4	B	371	375	Right-handed 310
Helix 41	AE5	B	399	420	Right-handed alpha
Helix 42	AE6	B	424	433	Right-handed alpha
Helix 43	AE7	B	434	444	Right-handed alpha
Helix 44	AE8	B	445	447	Right-handed 310
Helix 45	AE9	B	448	453	Right-handed alpha
Helix 46	AF1	B	469	476	Right-handed alpha
Helix 47	AF2	B	490	496	Right-handed alpha
Helix 48	AF3	B	497	499	Right-handed 310
Helix 49	AF4	B	500	507	Right-handed alpha
Helix 50	AF5	B	516	523	Right-handed alpha
Helix 51	AF6	B	546	560	Right-handed alpha
Helix 52	AF7	B	560	571	Right-handed alpha
Helix 53	AF8	B	599	608	Right-handed alpha
Helix 54	AF9	B	632	645	Right-handed alpha
Helix 55	AG1	B	648	666	Right-handed alpha
Helix 56	AG2	B	672	689	Right-handed alpha
Helix 57	AG3	C	116	129	Right-handed alpha
Helix 58	AG4	D	67	82	Right-handed alpha
Helix 59	AG5	D	140	150	Right-handed alpha
Helix 60	AG6	D	201	205	Right-handed 310
Helix 61	AG7	D	229	239	Right-handed alpha
Helix 62	AG8	D	242	248	Right-handed 310
Helix 63	AG9	D	251	262	Right-handed alpha
Helix 64	AH1	D	307	315	Right-handed alpha
Helix 65	AH2	D	463	481	Right-handed alpha
Helix 66	AH3	D	497	499	Right-handed 310
Helix 67	AH4	D	500	512	Right-handed alpha
Helix 68	AH5	D	527	539	Right-handed alpha
Helix 69	AH6	D	549	554	Right-handed alpha
Helix 70	AH7	D	556	572	Right-handed alpha
Helix 71	AH8	D	580	583	Right-handed 310
Helix 72	AH9	D	584	589	Right-handed 310
Helix 73	AI1	D	641	658	Right-handed alpha
Helix 74	AI2	D	672	674	Right-handed 310
Helix 75	AI3	D	675	695	Right-handed alpha
Helix 76	AI4	D	775	788	Right-handed alpha
Helix 77	AI5	D	800	817	Right-handed alpha
Helix 78	AI6	D	837	845	Right-handed alpha
Helix 79	AI7	D	849	855	Right-handed alpha

There are 19 sheets in PDB entry 9W5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	217	parallel
Strand 9	B	278	279	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	148	anti-parallel
Strand 7	A	154	159	anti-parallel
Strand 8	A	164	169	anti-parallel
Strand 9	B	13	16	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	360	364	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	456	459	anti-parallel
Strand 3	A	510	513	anti-parallel
Strand 4	A	482	487	parallel
Strand 5	A	531	535	parallel
Strand 6	A	527	528	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	580	first strand
Strand 2	A	625	628	parallel
Strand 3	A	589	592	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	323	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	360	364	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	456	459	anti-parallel
Strand 3	B	511	513	anti-parallel
Strand 4	B	483	487	parallel
Strand 5	B	533	535	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	625	628	parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	68	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	6	10	anti-parallel
Strand 5	C	99	101	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	36	42	anti-parallel
Strand 3	C	47	53	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	99	102	anti-parallel
Strand 3	D	53	62	anti-parallel
Strand 4	D	129	132	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	99	102	anti-parallel
Strand 3	D	53	62	anti-parallel
Strand 4	D	136	139	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	279	284	anti-parallel
Strand 3	D	328	330	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	297	first strand
Strand 2	D	303	306	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	427	428	first strand
Strand 2	D	418	419	anti-parallel
Strand 3	D	577	578	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	451	455	parallel
Strand 3	D	517	522	parallel
Strand 4	D	544	548	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	625	632	first strand
Strand 2	D	610	617	anti-parallel
Strand 3	D	591	599	anti-parallel
Strand 4	D	663	669	parallel
Strand 5	D	701	707	parallel
Strand 6	D	766	770	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5I