Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9W5T entry

There is 1 chain in PDB entry 9W5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2TRP 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9W5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 28Right-handed alpha
Helix 2
AA2
A
49 57Right-handed alpha
Helix 3
AA3
A
64 69Right-handed alpha
Helix 4
AA4
A
95 104Right-handed alpha
Helix 5
AA5
A
107 133Right-handed alpha
Helix 6
AA6
A
138 142Right-handed alpha
Helix 7
AA7
A
144 151Right-handed alpha
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
160 175Right-handed alpha
Helix 10
AB1
A
181 201Right-handed alpha
Helix 11
AB2
A
202 207Right-handed 310
Helix 12
AB3
A
210 217Right-handed alpha
Helix 13
AB4
A
224 240Right-handed alpha
Helix 14
AB5
A
240 256Right-handed alpha
Helix 15
AB6
A
257 267Right-handed alpha
Helix 16
AB7
A
269 282Right-handed alpha
Helix 17
AB8
A
313 319Right-handed alpha
Helix 18
AB9
A
351 370Right-handed alpha
Helix 19
AC1
A
378 382Right-handed 310
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There are 3 sheets in PDB entry 9W5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
309 312parallel
Strand 4
A
289 293anti-parallel
Strand 5
A
62 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
397 399anti-parallel
Strand 3
A
374 375anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 299first strand
Strand 2
A
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il