Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9W5X entry

There are 3 chains in PDB entry 9W5X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASP 491
B	LYS 3	ASP 491
C	LYS 3	ASP 280

There are100 helices in PDB entry 9W5X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	13	20	Right-handed alpha
Helix 3	AA3	A	21	23	Right-handed 310
Helix 4	AA4	A	51	59	Right-handed alpha
Helix 5	AA5	A	61	68	Right-handed alpha
Helix 6	AA6	A	72	88	Right-handed alpha
Helix 7	AA7	A	95	105	Right-handed alpha
Helix 8	AA8	A	133	137	Right-handed 310
Helix 9	AA9	A	138	176	Right-handed alpha
Helix 10	AB1	A	181	184	Right-handed 310
Helix 11	AB2	A	190	194	Right-handed 310
Helix 12	AB3	A	196	211	Right-handed alpha
Helix 13	AB4	A	216	227	Right-handed alpha
Helix 14	AB5	A	244	252	Right-handed alpha
Helix 15	AB6	A	254	265	Right-handed alpha
Helix 16	AB7	A	280	288	Right-handed alpha
Helix 17	AB8	A	292	299	Right-handed alpha
Helix 18	AB9	A	311	318	Right-handed alpha
Helix 19	AC1	A	324	330	Right-handed alpha
Helix 20	AC2	A	330	340	Right-handed alpha
Helix 21	AC3	A	364	378	Right-handed alpha
Helix 22	AC4	A	381	385	Right-handed 310
Helix 23	AC5	A	390	395	Right-handed alpha
Helix 24	AC6	A	454	462	Right-handed alpha
Helix 25	AC7	A	463	465	Right-handed 310
Helix 26	AC8	A	481	491	Right-handed alpha
Helix 27	AC9	B	7	11	Right-handed 310
Helix 28	AD1	B	13	19	Right-handed alpha
Helix 29	AD2	B	20	23	Right-handed 310
Helix 30	AD3	B	51	59	Right-handed alpha
Helix 31	AD4	B	61	68	Right-handed alpha
Helix 32	AD5	B	72	88	Right-handed alpha
Helix 33	AD6	B	95	105	Right-handed alpha
Helix 34	AD7	B	133	135	Right-handed 310
Helix 35	AD8	B	136	176	Right-handed alpha
Helix 36	AD9	B	181	184	Right-handed 310
Helix 37	AE1	B	190	194	Right-handed 310
Helix 38	AE2	B	196	211	Right-handed alpha
Helix 39	AE3	B	216	227	Right-handed alpha
Helix 40	AE4	B	244	252	Right-handed alpha
Helix 41	AE5	B	254	265	Right-handed alpha
Helix 42	AE6	B	280	288	Right-handed alpha
Helix 43	AE7	B	292	299	Right-handed alpha
Helix 44	AE8	B	311	318	Right-handed alpha
Helix 45	AE9	B	324	330	Right-handed alpha
Helix 46	AF1	B	330	340	Right-handed alpha
Helix 47	AF2	B	364	378	Right-handed alpha
Helix 48	AF3	B	381	383	Right-handed 310
Helix 49	AF4	B	390	395	Right-handed alpha
Helix 50	AF5	B	454	461	Right-handed alpha
Helix 51	AF6	B	481	491	Right-handed alpha
Helix 52	AF7	C	7	11	Right-handed 310
Helix 53	AF8	C	14	23	Right-handed alpha
Helix 54	AF9	C	51	59	Right-handed alpha
Helix 55	AG1	C	61	68	Right-handed alpha
Helix 56	AG2	C	72	89	Right-handed alpha
Helix 57	AG3	C	95	105	Right-handed alpha
Helix 58	AG4	C	133	135	Right-handed 310
Helix 59	AG5	C	136	176	Right-handed alpha
Helix 60	AG6	C	181	184	Right-handed 310
Helix 61	AG7	C	190	194	Right-handed 310
Helix 62	AG8	C	196	211	Right-handed alpha
Helix 63	AG9	C	216	227	Right-handed alpha
Helix 64	AH1	C	244	251	Right-handed alpha
Helix 65	AH2	C	254	265	Right-handed alpha
Helix 66	AH3	C	280	288	Right-handed alpha
Helix 67	AH4	C	292	299	Right-handed alpha
Helix 68	AH5	C	311	318	Right-handed alpha
Helix 69	AH6	C	324	330	Right-handed alpha
Helix 70	AH7	C	330	340	Right-handed alpha
Helix 71	AH8	C	364	378	Right-handed alpha
Helix 72	AH9	C	381	385	Right-handed 310
Helix 73	AI1	C	390	395	Right-handed alpha
Helix 74	AI2	C	454	462	Right-handed alpha
Helix 75	AI3	C	481	491	Right-handed alpha
Helix 76	AI4	D	7	11	Right-handed 310
Helix 77	AI5	D	13	19	Right-handed alpha
Helix 78	AI6	D	20	23	Right-handed 310
Helix 79	AI7	D	51	59	Right-handed alpha
Helix 80	AI8	D	61	68	Right-handed alpha
Helix 81	AI9	D	72	88	Right-handed alpha
Helix 82	AJ1	D	95	105	Right-handed alpha
Helix 83	AJ2	D	133	137	Right-handed 310
Helix 84	AJ3	D	138	176	Right-handed alpha
Helix 85	AJ4	D	181	184	Right-handed 310
Helix 86	AJ5	D	190	194	Right-handed 310
Helix 87	AJ6	D	196	211	Right-handed alpha
Helix 88	AJ7	D	216	227	Right-handed alpha
Helix 89	AJ8	D	244	252	Right-handed alpha
Helix 90	AJ9	D	254	265	Right-handed alpha
Helix 91	AK1	D	280	288	Right-handed alpha
Helix 92	AK2	D	292	299	Right-handed alpha
Helix 93	AK3	D	311	318	Right-handed alpha
Helix 94	AK4	D	324	330	Right-handed alpha
Helix 95	AK5	D	330	340	Right-handed alpha
Helix 96	AK6	D	364	378	Right-handed alpha
Helix 97	AK7	D	381	383	Right-handed 310
Helix 98	AK8	D	390	395	Right-handed alpha
Helix 99	AK9	D	454	462	Right-handed alpha
Helix 100	AL1	D	481	491	Right-handed alpha

There are 20 sheets in PDB entry 9W5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	419	first strand
Strand 2	A	404	413	anti-parallel
Strand 3	A	27	36	anti-parallel
Strand 4	A	127	131	anti-parallel
Strand 5	A	109	113	anti-parallel
Strand 6	A	468	472	anti-parallel
Strand 7	A	475	476	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	119	121	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	188	first strand
Strand 2	A	386	389	parallel
Strand 3	A	355	359	parallel
Strand 4	A	301	306	parallel
Strand 5	A	270	275	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	349	351	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	443	first strand
Strand 2	A	446	453	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	419	first strand
Strand 2	B	404	413	anti-parallel
Strand 3	B	27	36	anti-parallel
Strand 4	B	127	131	anti-parallel
Strand 5	B	109	113	anti-parallel
Strand 6	B	468	472	anti-parallel
Strand 7	B	475	476	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	119	121	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	188	first strand
Strand 2	B	385	389	parallel
Strand 3	B	355	359	parallel
Strand 4	B	300	306	parallel
Strand 5	B	269	275	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	349	351	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	443	first strand
Strand 2	B	446	453	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	419	first strand
Strand 2	C	404	413	anti-parallel
Strand 3	C	27	36	anti-parallel
Strand 4	C	127	131	anti-parallel
Strand 5	C	109	113	anti-parallel
Strand 6	C	468	472	anti-parallel
Strand 7	C	475	476	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	119	121	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	188	first strand
Strand 2	C	386	389	parallel
Strand 3	C	355	359	parallel
Strand 4	C	300	306	parallel
Strand 5	C	269	275	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	349	351	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	443	first strand
Strand 2	C	446	453	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	419	first strand
Strand 2	D	404	413	anti-parallel
Strand 3	D	27	36	anti-parallel
Strand 4	D	127	131	anti-parallel
Strand 5	D	109	113	anti-parallel
Strand 6	D	468	472	anti-parallel
Strand 7	D	475	476	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	119	121	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	188	first strand
Strand 2	D	385	389	parallel
Strand 3	D	355	359	parallel
Strand 4	D	301	306	parallel
Strand 5	D	270	275	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	343	first strand
Strand 2	D	349	351	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	443	first strand
Strand 2	D	446	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9W5X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9W5X